Variant report

Variant	rs516640
Chromosome Location	chr1:197258199-197258200
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1033826	1.00[MEX][hapmap]
rs1570412	1.00[MEX][hapmap]
rs1570413	1.00[MEX][hapmap]
rs1764626	0.93[AFR][1000 genomes]
rs1764627	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1764630	1.00[ASW][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2821105	1.00[MEX][hapmap]
rs2821124	1.00[MEX][hapmap]
rs3902057	1.00[MEX][hapmap]
rs4244150	1.00[MEX][hapmap]
rs473663	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs476505	1.00[YRI][hapmap]
rs613010	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6428392	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs6680205	1.00[AMR][1000 genomes]
rs6684593	1.00[MEX][hapmap]
rs7514167	1.00[MEX][hapmap]
rs942050	1.00[MEX][hapmap]
rs980371	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528460	chr1:196542567-197446702	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:197256800-197258200	Enhancers	Brain Anterior Caudate	brain
2	chr1:197257400-197259400	Weak transcription	Brain Substantia Nigra	brain
3	chr1:197257400-197273400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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