Variant report
Variant | rs9427667 |
---|---|
Chromosome Location | chr1:197375495-197375496 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1033826 | 0.89[AFR][1000 genomes] |
rs10801606 | 0.80[AFR][1000 genomes] |
rs1570412 | 0.89[AFR][1000 genomes] |
rs1570413 | 0.89[AFR][1000 genomes] |
rs1923758 | 0.89[AFR][1000 genomes] |
rs1923761 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs1923763 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs1951697 | 0.89[AFR][1000 genomes] |
rs2146485 | 0.89[AFR][1000 genomes] |
rs2181373 | 0.93[AFR][1000 genomes] |
rs2359119 | 0.80[AFR][1000 genomes] |
rs2476016 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs2476017 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs2476022 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs2476024 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs2494272 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs2759660 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs2821099 | 0.93[AFR][1000 genomes] |
rs2821100 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs2821105 | 0.85[AMR][1000 genomes] |
rs3888104 | 0.91[AFR][1000 genomes] |
rs3902057 | 0.91[AFR][1000 genomes] |
rs4335404 | 0.89[AFR][1000 genomes] |
rs6684593 | 0.90[AFR][1000 genomes] |
rs6689739 | 0.84[AFR][1000 genomes] |
rs6691940 | 0.80[AFR][1000 genomes] |
rs7514167 | 0.80[AFR][1000 genomes] |
rs7515749 | 0.86[AFR][1000 genomes] |
rs927511 | 0.89[AFR][1000 genomes] |
rs980370 | 0.89[AFR][1000 genomes] |
rs980371 | 0.89[AFR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv528460 | chr1:196542567-197446702 | Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 26 gene(s) | inside rSNPs | diseases |
2 | nsv1014039 | chr1:197311285-197529212 | Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:197372600-197375800 | Weak transcription | Fetal Brain Female | brain |