Variant report

Variant	rs1592707
Chromosome Location	chr1:197456801-197456802
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs1022908	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1024920	0.81[YRI][hapmap]
rs1033826	0.85[ASW][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[AMR][1000 genomes]
rs10494753	0.87[AMR][1000 genomes]
rs10737689	0.81[YRI][hapmap]
rs10754226	1.00[MEX][hapmap];0.91[MKK][hapmap]
rs10801606	1.00[AMR][1000 genomes]
rs10922235	1.00[AMR][1000 genomes]
rs10922241	0.91[LWK][hapmap]
rs12089070	0.87[AMR][1000 genomes]
rs1362940	1.00[MEX][hapmap]
rs1421390	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1421391	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1421394	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1570412	0.85[ASW][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[AMR][1000 genomes]
rs1570413	0.85[ASW][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[AMR][1000 genomes]
rs1592708	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1862011	0.91[MKK][hapmap]
rs1923758	1.00[AMR][1000 genomes]
rs1951697	0.85[AMR][1000 genomes]
rs1998433	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2146484	0.87[AMR][1000 genomes]
rs2146485	1.00[AMR][1000 genomes]
rs2160967	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2181373	1.00[AMR][1000 genomes]
rs2359119	1.00[AMR][1000 genomes]
rs2821099	1.00[AMR][1000 genomes]
rs2821105	0.85[ASW][hapmap];1.00[MEX][hapmap]
rs2821124	1.00[MEX][hapmap]
rs3888104	1.00[AMR][1000 genomes]
rs3902057	0.85[ASW][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[AMR][1000 genomes]
rs4244150	1.00[MEX][hapmap];0.88[MKK][hapmap];0.87[AMR][1000 genomes]
rs4335404	1.00[AMR][1000 genomes]
rs4428919	0.87[AMR][1000 genomes]
rs4989560	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs516640	1.00[MEX][hapmap]
rs6428401	0.87[AMR][1000 genomes]
rs6428402	1.00[AMR][1000 genomes]
rs6428403	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6428405	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6428406	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6428407	0.87[AFR][1000 genomes]
rs6428408	0.81[YRI][hapmap]
rs6656674	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6664766	1.00[AMR][1000 genomes]
rs6670147	1.00[AMR][1000 genomes]
rs6678240	0.81[YRI][hapmap]
rs6678776	0.87[AMR][1000 genomes]
rs6684593	0.85[ASW][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[AMR][1000 genomes]
rs6686241	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6689739	1.00[AMR][1000 genomes]
rs6690015	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6691940	1.00[AMR][1000 genomes]
rs6694254	1.00[AMR][1000 genomes]
rs7514167	0.92[ASW][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[AMR][1000 genomes]
rs7515749	1.00[AMR][1000 genomes]
rs7525737	0.87[AMR][1000 genomes]
rs7530158	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7553327	0.91[LWK][hapmap]
rs927511	1.00[AMR][1000 genomes]
rs942050	1.00[MEX][hapmap];0.88[MKK][hapmap];0.87[AMR][1000 genomes]
rs980370	1.00[AMR][1000 genomes]
rs980371	0.85[ASW][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014039	chr1:197311285-197529212	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:197456200-197457400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
2	chr1:197456400-197457000	ZNF genes & repeats	Brain Germinal Matrix	brain

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