The 2.0 version of rSNPBase

Variant report

Variant rs1862011
Chromosome Location chr1:197563071-197563072
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:43 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:197506800-197564600 Weak transcription Primary T killer memory cells from peripheral blood blood
2 chr1:197508400-197602400 Weak transcription Left Ventricle heart
3 chr1:197537000-197574600 Weak transcription NHDF-Ad bronchial
4 chr1:197537400-197602200 Weak transcription Primary T helper naive cells fromperipheralblood blood
5 chr1:197537800-197585600 Weak transcription Primary T helper cells PMA-I stimulated --
6 chr1:197538600-197563600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
7 chr1:197541800-197566000 Weak transcription Ovary ovary
8 chr1:197541800-197602400 Weak transcription Duodenum Smooth Muscle Duodenum
9 chr1:197541800-197602600 Weak transcription Fetal Thymus thymus
10 chr1:197542000-197568000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
11 chr1:197542000-197569200 Weak transcription Pancreas Pancrea
12 chr1:197542000-197571400 Weak transcription Esophagus oesophagus
13 chr1:197542000-197574400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
14 chr1:197542000-197609000 Weak transcription Colonic Mucosa Colon
15 chr1:197542000-197626400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
16 chr1:197542600-197563200 Weak transcription Fetal Heart heart
17 chr1:197544400-197602400 Weak transcription Primary B cells from cord blood blood
18 chr1:197544600-197570000 Weak transcription Primary hematopoietic stem cells short term culture blood
19 chr1:197545600-197567400 Weak transcription Rectal Smooth Muscle rectum
20 chr1:197547000-197587200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
21 chr1:197547400-197602400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
22 chr1:197547600-197566200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
23 chr1:197548600-197569400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
24 chr1:197551400-197585600 Weak transcription Primary monocytes fromperipheralblood blood
25 chr1:197552600-197563400 Weak transcription Primary T helper cells fromperipheralblood blood
26 chr1:197553000-197583800 Weak transcription Primary T cells from cord blood blood
27 chr1:197553000-197585400 Weak transcription Primary T cells fromperipheralblood blood
28 chr1:197553000-197629800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
29 chr1:197553200-197564000 Weak transcription Rectal Mucosa Donor 31 rectum
30 chr1:197556600-197563200 Weak transcription Monocytes-CD14+_RO01746 blood
31 chr1:197557000-197564200 Weak transcription Sigmoid Colon Sigmoid Colon
32 chr1:197558800-197565000 Strong transcription Primary Natural Killer cells fromperipheralblood blood
33 chr1:197560200-197566000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
34 chr1:197560200-197585400 Weak transcription Rectal Mucosa Donor 29 rectum
35 chr1:197560200-197591400 Weak transcription Duodenum Mucosa Duodenum
36 chr1:197560600-197563200 Weak transcription Primary T regulatory cells fromperipheralblood blood
37 chr1:197561200-197584400 Weak transcription Liver Liver
38 chr1:197561200-197585400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
39 chr1:197561400-197589800 Weak transcription Fetal Intestine Large intestine
40 chr1:197561800-197563200 Weak transcription Dnd41 blood
41 chr1:197562000-197563800 Weak transcription Primary hematopoietic stem cells blood
42 chr1:197563000-197565000 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
43 chr1:197563000-197565200 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015