The 2.0 version of rSNPBase

Variant report

Variant rs2013617
Chromosome Location chr1:197482167-197482168
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:57 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:197467200-197499000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
2 chr1:197475000-197484800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
3 chr1:197476800-197482600 Weak transcription Hela-S3 cervix
4 chr1:197476800-197483400 Weak transcription Small Intestine intestine
5 chr1:197476800-197484600 Weak transcription Fetal Intestine Large intestine
6 chr1:197478000-197482200 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
7 chr1:197478000-197483800 Weak transcription Right Ventricle heart
8 chr1:197478000-197541200 Weak transcription Aorta Aorta
9 chr1:197478200-197482200 Strong transcription Primary T helper cells fromperipheralblood blood
10 chr1:197478200-197482600 Weak transcription Lung lung
11 chr1:197478600-197491200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
12 chr1:197478800-197482200 Strong transcription Primary hematopoietic stem cells blood
13 chr1:197479000-197482200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
14 chr1:197479000-197482200 Strong transcription Monocytes-CD14+_RO01746 blood
15 chr1:197480000-197482400 Weak transcription Breast Myoepithelial Primary Cells Breast
16 chr1:197480000-197484600 Weak transcription Duodenum Smooth Muscle Duodenum
17 chr1:197480000-197489600 Weak transcription Psoas Muscle Psoas
18 chr1:197480000-197489800 Weak transcription Brain Anterior Caudate brain
19 chr1:197480000-197491000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
20 chr1:197480000-197535800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
21 chr1:197480200-197485400 Weak transcription Thymus Thymus
22 chr1:197480200-197485600 Weak transcription Muscle Satellite Cultured Cells --
23 chr1:197480200-197489200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
24 chr1:197480200-197541200 Weak transcription Esophagus oesophagus
25 chr1:197480200-197541200 Weak transcription Fetal Thymus thymus
26 chr1:197480400-197482200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
27 chr1:197480400-197482600 Weak transcription K562 blood
28 chr1:197480400-197482800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
29 chr1:197480400-197484000 Weak transcription Fetal Lung lung
30 chr1:197480400-197485800 Weak transcription Rectal Smooth Muscle rectum
31 chr1:197480400-197487200 Weak transcription Ovary ovary
32 chr1:197480400-197541200 Weak transcription Sigmoid Colon Sigmoid Colon
33 chr1:197480600-197486800 Weak transcription Fetal Brain Male brain
34 chr1:197481000-197507000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
35 chr1:197481200-197482800 Weak transcription NHDF-Ad bronchial
36 chr1:197481200-197483800 Weak transcription Liver Liver
37 chr1:197481200-197484600 Weak transcription Fetal Heart heart
38 chr1:197481200-197484800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
39 chr1:197481200-197485800 Weak transcription Primary B cells from cord blood blood
40 chr1:197481200-197491200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
41 chr1:197481200-197503400 Weak transcription Primary T cells from cord blood blood
42 chr1:197481200-197504200 Weak transcription Duodenum Mucosa Duodenum
43 chr1:197481200-197507200 Weak transcription Dnd41 blood
44 chr1:197481200-197508000 Weak transcription Left Ventricle heart
45 chr1:197481200-197513400 Weak transcription Adipose Nuclei Adipose
46 chr1:197481400-197482200 Strong transcription Primary T cells fromperipheralblood blood
47 chr1:197481400-197483600 Weak transcription Primary neutrophils fromperipheralblood blood
48 chr1:197481400-197487800 Weak transcription Primary T helper naive cells from peripheral blood blood
49 chr1:197481400-197503600 Weak transcription Rectal Mucosa Donor 31 rectum
50 chr1:197481400-197529600 Weak transcription Primary hematopoietic stem cells short term culture blood

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Last update: Aug 31, 2015