The 2.0 version of rSNPBase

Variant report

Variant rs1421389
Chromosome Location chr1:197479378-197479379
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:64 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:197467200-197499000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
2 chr1:197474000-197481600 Weak transcription Primary T killer naive cells fromperipheralblood blood
3 chr1:197475000-197484800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
4 chr1:197476200-197479600 Weak transcription Primary hematopoietic stem cells short term culture blood
5 chr1:197476600-197479600 Weak transcription Ovary ovary
6 chr1:197476800-197479600 Weak transcription Primary T cells from cord blood blood
7 chr1:197476800-197479600 Weak transcription Esophagus oesophagus
8 chr1:197476800-197479600 Weak transcription Left Ventricle heart
9 chr1:197476800-197479600 Weak transcription Sigmoid Colon Sigmoid Colon
10 chr1:197476800-197482600 Weak transcription Hela-S3 cervix
11 chr1:197476800-197483400 Weak transcription Small Intestine intestine
12 chr1:197476800-197484600 Weak transcription Fetal Intestine Large intestine
13 chr1:197477400-197479600 Weak transcription Primary B cells from peripheral blood blood
14 chr1:197477800-197479400 Weak transcription Liver Liver
15 chr1:197477800-197479600 Weak transcription Primary T cells fromperipheralblood blood
16 chr1:197477800-197480400 Weak transcription Fetal Kidney kidney
17 chr1:197477800-197481000 Strong transcription Primary Natural Killer cells fromperipheralblood blood
18 chr1:197478000-197479600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
19 chr1:197478000-197479600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
20 chr1:197478000-197479600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
21 chr1:197478000-197479600 Weak transcription Fetal Thymus thymus
22 chr1:197478000-197479600 Weak transcription Rectal Smooth Muscle rectum
23 chr1:197478000-197479600 Weak transcription Thymus Thymus
24 chr1:197478000-197480600 Weak transcription Colonic Mucosa Colon
25 chr1:197478000-197480800 Strong transcription Dnd41 blood
26 chr1:197478000-197481000 Weak transcription Primary T helper naive cells from peripheral blood blood
27 chr1:197478000-197482200 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
28 chr1:197478000-197483800 Weak transcription Right Ventricle heart
29 chr1:197478000-197541200 Weak transcription Aorta Aorta
30 chr1:197478200-197479600 Strong transcription Primary B cells from cord blood blood
31 chr1:197478200-197481200 Strong transcription Duodenum Mucosa Duodenum
32 chr1:197478200-197481800 Weak transcription Primary T killer memory cells from peripheral blood blood
33 chr1:197478200-197482200 Strong transcription Primary T helper cells fromperipheralblood blood
34 chr1:197478200-197482600 Weak transcription Lung lung
35 chr1:197478400-197480000 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
36 chr1:197478400-197480200 Strong transcription Primary T helper 17 cells PMA-I stimulated --
37 chr1:197478600-197479600 Weak transcription Adipose Nuclei Adipose
38 chr1:197478600-197480800 Weak transcription Colon Smooth Muscle Colon
39 chr1:197478600-197480800 Weak transcription NHDF-Ad bronchial
40 chr1:197478600-197481000 Weak transcription Fetal Brain Female brain
41 chr1:197478600-197481000 Weak transcription Fetal Muscle Leg muscle
42 chr1:197478600-197481200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
43 chr1:197478600-197481200 Weak transcription Pancreas Pancrea
44 chr1:197478600-197491200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
45 chr1:197478800-197481000 Weak transcription NHEK skin
46 chr1:197478800-197481400 Weak transcription Primary T helper naive cells fromperipheralblood blood
47 chr1:197478800-197481400 Strong transcription Rectal Mucosa Donor 31 rectum
48 chr1:197478800-197481600 Weak transcription Skeletal Muscle Female skeletal muscle
49 chr1:197478800-197481800 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
50 chr1:197478800-197482000 Strong transcription Primary T regulatory cells fromperipheralblood blood

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Last update: Aug 31, 2015