The 2.0 version of rSNPBase

Variant report

Variant rs1558975
Chromosome Location chr1:197550140-197550141
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:52 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:197506800-197564600 Weak transcription Primary T killer memory cells from peripheral blood blood
2 chr1:197508400-197602400 Weak transcription Left Ventricle heart
3 chr1:197526800-197563000 Weak transcription Osteobl bone
4 chr1:197537000-197574600 Weak transcription NHDF-Ad bronchial
5 chr1:197537400-197550400 Weak transcription Fetal Lung lung
6 chr1:197537400-197602200 Weak transcription Primary T helper naive cells fromperipheralblood blood
7 chr1:197537800-197550400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
8 chr1:197537800-197585600 Weak transcription Primary T helper cells PMA-I stimulated --
9 chr1:197538000-197554000 Weak transcription Colon Smooth Muscle Colon
10 chr1:197538600-197563600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
11 chr1:197539000-197554400 Weak transcription Primary B cells from peripheral blood blood
12 chr1:197539000-197556600 Weak transcription Fetal Kidney kidney
13 chr1:197540000-197554600 Weak transcription Stomach Smooth Muscle stomach
14 chr1:197541800-197551000 Weak transcription Primary T helper cells fromperipheralblood blood
15 chr1:197541800-197566000 Weak transcription Ovary ovary
16 chr1:197541800-197602400 Weak transcription Duodenum Smooth Muscle Duodenum
17 chr1:197541800-197602600 Weak transcription Fetal Thymus thymus
18 chr1:197542000-197550200 Weak transcription Primary monocytes fromperipheralblood blood
19 chr1:197542000-197550200 Weak transcription Fetal Intestine Large intestine
20 chr1:197542000-197552200 Weak transcription Primary T cells from cord blood blood
21 chr1:197542000-197554000 Weak transcription Breast Myoepithelial Primary Cells Breast
22 chr1:197542000-197555800 Weak transcription Sigmoid Colon Sigmoid Colon
23 chr1:197542000-197557000 Weak transcription Fetal Intestine Small intestine
24 chr1:197542000-197559600 Weak transcription Rectal Mucosa Donor 29 rectum
25 chr1:197542000-197559800 Weak transcription Liver Liver
26 chr1:197542000-197568000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
27 chr1:197542000-197569200 Weak transcription Pancreas Pancrea
28 chr1:197542000-197571400 Weak transcription Esophagus oesophagus
29 chr1:197542000-197574400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
30 chr1:197542000-197609000 Weak transcription Colonic Mucosa Colon
31 chr1:197542000-197626400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
32 chr1:197542600-197563200 Weak transcription Fetal Heart heart
33 chr1:197542800-197550400 Weak transcription Duodenum Mucosa Duodenum
34 chr1:197544000-197553600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
35 chr1:197544000-197562000 Weak transcription Primary T helper naive cells from peripheral blood blood
36 chr1:197544400-197602400 Weak transcription Primary B cells from cord blood blood
37 chr1:197544600-197570000 Weak transcription Primary hematopoietic stem cells short term culture blood
38 chr1:197545400-197552600 Strong transcription Monocytes-CD14+_RO01746 blood
39 chr1:197545600-197551800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
40 chr1:197545600-197553200 Strong transcription Dnd41 blood
41 chr1:197545600-197567400 Weak transcription Rectal Smooth Muscle rectum
42 chr1:197546000-197552000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
43 chr1:197546800-197551000 Weak transcription Primary T regulatory cells fromperipheralblood blood
44 chr1:197547000-197552000 Weak transcription Rectal Mucosa Donor 31 rectum
45 chr1:197547000-197587200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
46 chr1:197547400-197550400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
47 chr1:197547400-197602400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
48 chr1:197547600-197566200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
49 chr1:197548600-197553200 Strong transcription Primary Natural Killer cells fromperipheralblood blood
50 chr1:197548600-197569400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --

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Last update: Aug 31, 2015