The 2.0 version of rSNPBase

Variant report

Variant rs3902061
Chromosome Location chr1:197510025-197510026
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:54 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:197478000-197541200 Weak transcription Aorta Aorta
2 chr1:197480000-197535800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
3 chr1:197480200-197541200 Weak transcription Esophagus oesophagus
4 chr1:197480200-197541200 Weak transcription Fetal Thymus thymus
5 chr1:197480400-197541200 Weak transcription Sigmoid Colon Sigmoid Colon
6 chr1:197481200-197513400 Weak transcription Adipose Nuclei Adipose
7 chr1:197481400-197529600 Weak transcription Primary hematopoietic stem cells short term culture blood
8 chr1:197487800-197536000 Weak transcription Fetal Lung lung
9 chr1:197491600-197520800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
10 chr1:197494600-197510200 Weak transcription Thymus Thymus
11 chr1:197495200-197510800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
12 chr1:197496200-197532400 Weak transcription Duodenum Smooth Muscle Duodenum
13 chr1:197500600-197529400 Weak transcription Primary hematopoietic stem cells blood
14 chr1:197502200-197531800 Weak transcription Primary T cells fromperipheralblood blood
15 chr1:197502400-197534600 Weak transcription Fetal Intestine Large intestine
16 chr1:197503200-197524000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
17 chr1:197503200-197526400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
18 chr1:197503200-197541200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
19 chr1:197503600-197514400 Weak transcription Right Ventricle heart
20 chr1:197503600-197535800 Weak transcription Primary T helper naive cells fromperipheralblood blood
21 chr1:197504000-197510400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
22 chr1:197504200-197529000 Weak transcription Fetal Intestine Small intestine
23 chr1:197504400-197510600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
24 chr1:197505400-197532400 Weak transcription Breast Myoepithelial Primary Cells Breast
25 chr1:197505600-197541000 Weak transcription Pancreas Pancrea
26 chr1:197506000-197513800 Weak transcription Colon Smooth Muscle Colon
27 chr1:197506200-197526000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
28 chr1:197506400-197535800 Weak transcription Primary B cells from peripheral blood blood
29 chr1:197506600-197537600 Weak transcription Skeletal Muscle Female skeletal muscle
30 chr1:197506800-197535600 Weak transcription Primary B cells from cord blood blood
31 chr1:197506800-197564600 Weak transcription Primary T killer memory cells from peripheral blood blood
32 chr1:197507200-197519000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
33 chr1:197507800-197510200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
34 chr1:197508400-197522400 Weak transcription Dnd41 blood
35 chr1:197508400-197602400 Weak transcription Left Ventricle heart
36 chr1:197508600-197528400 Weak transcription Rectal Mucosa Donor 29 rectum
37 chr1:197508600-197532200 Weak transcription Primary T cells from cord blood blood
38 chr1:197509000-197511000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
39 chr1:197509000-197514000 Weak transcription Primary monocytes fromperipheralblood blood
40 chr1:197509000-197529600 Weak transcription Rectal Mucosa Donor 31 rectum
41 chr1:197509200-197529200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
42 chr1:197509200-197529600 Weak transcription Primary T helper cells fromperipheralblood blood
43 chr1:197509200-197535600 Weak transcription Duodenum Mucosa Duodenum
44 chr1:197509200-197535600 Weak transcription Monocytes-CD14+_RO01746 blood
45 chr1:197509400-197510200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
46 chr1:197509400-197513800 Weak transcription Primary T helper cells PMA-I stimulated --
47 chr1:197509400-197536000 Weak transcription Liver Liver
48 chr1:197509800-197510600 Enhancers H1 Cell Line embryonic stem cell
49 chr1:197509800-197511200 Enhancers iPS-20b Cell Line embryonic stem cell
50 chr1:197509800-197511400 Enhancers HUES48 Cell Line embryonic stem cell

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Last update: Aug 31, 2015