Variant report
Variant | rs1028785 |
---|---|
Chromosome Location | chr1:197473318-197473319 |
allele | A/C/G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr1:197467290..197470026-chr1:197472258..197475050,3 | K562 | blood: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10158300 | 1.00[AMR][1000 genomes] |
rs1024920 | 1.00[YRI][hapmap];0.89[AFR][1000 genomes] |
rs10494759 | 1.00[AMR][1000 genomes] |
rs10737689 | 1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.85[AMR][1000 genomes] |
rs10737690 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs10737691 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs10754226 | 1.00[AMR][1000 genomes] |
rs10801610 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs10801611 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs10801615 | 1.00[AMR][1000 genomes] |
rs10922241 | 1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs10922245 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs1359458 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs1408841 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs1421389 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs1421396 | 0.94[AFR][1000 genomes];0.85[AMR][1000 genomes] |
rs1421398 | 1.00[AMR][1000 genomes] |
rs1558975 | 1.00[AMR][1000 genomes] |
rs1570809 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs1582409 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs1862011 | 1.00[AMR][1000 genomes] |
rs1886627 | 1.00[AMR][1000 genomes] |
rs1923757 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs1977330 | 1.00[AMR][1000 genomes] |
rs2013617 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs2147771 | 1.00[AMR][1000 genomes] |
rs3790737 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs3902061 | 1.00[AMR][1000 genomes] |
rs4427436 | 1.00[AMR][1000 genomes] |
rs4477311 | 0.85[AMR][1000 genomes] |
rs4915243 | 0.81[YRI][hapmap];1.00[AMR][1000 genomes] |
rs4915547 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs4915548 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs6428407 | 0.87[AFR][1000 genomes];0.85[AMR][1000 genomes] |
rs6428408 | 1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs6428409 | 1.00[AMR][1000 genomes] |
rs6662893 | 1.00[AMR][1000 genomes] |
rs6676028 | 0.83[AFR][1000 genomes] |
rs6678240 | 1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.85[AMR][1000 genomes] |
rs7519686 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs7543631 | 1.00[AMR][1000 genomes] |
rs7553327 | 1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs981520 | 1.00[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1014039 | chr1:197311285-197529212 | Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
2 | nsv521647 | chr1:197464448-197529218 | Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
3 | nsv873074 | chr1:197464448-197698103 | Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
4 | nsv873075 | chr1:197464448-197714851 | Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
5 | nsv4010 | chr1:197471463-197511397 | Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:197467200-197499000 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
2 | chr1:197472200-197477800 | Weak transcription | Primary Natural Killer cells fromperipheralblood | blood |