The 2.0 version of rSNPBase

Variant report

Variant rs11806604
Chromosome Location chr1:197731121-197731122
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:59 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:197695800-197732800 Weak transcription Rectal Mucosa Donor 31 rectum
2 chr1:197695800-197742200 Weak transcription Duodenum Smooth Muscle Duodenum
3 chr1:197702800-197743800 Weak transcription Esophagus oesophagus
4 chr1:197706800-197741800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
5 chr1:197712200-197741600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
6 chr1:197712200-197742000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
7 chr1:197713000-197732800 Weak transcription Sigmoid Colon Sigmoid Colon
8 chr1:197713000-197734000 Weak transcription Fetal Thymus thymus
9 chr1:197713800-197733000 Weak transcription Aorta Aorta
10 chr1:197714400-197731600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
11 chr1:197714400-197743800 Weak transcription Spleen Spleen
12 chr1:197714600-197741600 Weak transcription Primary T cells fromperipheralblood blood
13 chr1:197714600-197742400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
14 chr1:197714600-197743600 Weak transcription Ovary ovary
15 chr1:197715400-197740000 Weak transcription Left Ventricle heart
16 chr1:197715400-197741800 Weak transcription Gastric stomach
17 chr1:197715600-197738400 Weak transcription Pancreas Pancrea
18 chr1:197716800-197731400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
19 chr1:197716800-197737000 Weak transcription Duodenum Mucosa Duodenum
20 chr1:197717000-197737200 Weak transcription Skeletal Muscle Female skeletal muscle
21 chr1:197718400-197732000 Weak transcription K562 blood
22 chr1:197718400-197740200 Weak transcription NHDF-Ad bronchial
23 chr1:197718600-197741800 Weak transcription Osteobl bone
24 chr1:197719200-197743800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
25 chr1:197720000-197731200 Weak transcription Primary T killer naive cells fromperipheralblood blood
26 chr1:197720200-197731400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
27 chr1:197720200-197740600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
28 chr1:197721200-197743000 Weak transcription Fetal Kidney kidney
29 chr1:197722600-197740800 Weak transcription Fetal Lung lung
30 chr1:197722800-197736800 Weak transcription Liver Liver
31 chr1:197723400-197732800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
32 chr1:197723800-197732000 Weak transcription Fetal Intestine Small intestine
33 chr1:197729200-197740600 Weak transcription Fetal Intestine Large intestine
34 chr1:197729800-197732400 Enhancers Primary hematopoietic stem cells blood
35 chr1:197730000-197733400 Weak transcription Fetal Heart heart
36 chr1:197730000-197735400 Enhancers Primary T helper memory cells from peripheral blood 1 blood
37 chr1:197730200-197735800 Enhancers Primary T helper memory cells from peripheral blood 2 blood
38 chr1:197730200-197737200 Weak transcription Breast Myoepithelial Primary Cells Breast
39 chr1:197730200-197742600 Weak transcription HMEC breast
40 chr1:197730400-197731800 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
41 chr1:197730400-197732400 Enhancers Primary T helper cells fromperipheralblood blood
42 chr1:197730600-197731200 Active TSS GM12878-XiMat blood
43 chr1:197730600-197731800 Flanking Active TSS Dnd41 blood
44 chr1:197730600-197732800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
45 chr1:197730600-197742600 Weak transcription NH-A brain
46 chr1:197730800-197731200 Flanking Active TSS Primary B cells from cord blood blood
47 chr1:197730800-197731200 Weak transcription NHEK skin
48 chr1:197730800-197731600 Flanking Active TSS Monocytes-CD14+_RO01746 blood
49 chr1:197730800-197731800 Enhancers Primary T helper naive cells from peripheral blood blood
50 chr1:197730800-197733600 Enhancers Primary T killer memory cells from peripheral blood blood

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Last update: Aug 31, 2015