Variant report

Variant	rs6664766
Chromosome Location	chr1:197442102-197442103
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1022908	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1033826	1.00[AMR][1000 genomes]
rs10494753	0.87[AMR][1000 genomes]
rs10801606	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10922235	0.96[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12089070	0.87[AMR][1000 genomes]
rs1421390	1.00[AMR][1000 genomes]
rs1421391	1.00[AMR][1000 genomes]
rs1421394	1.00[AMR][1000 genomes]
rs1570412	1.00[AMR][1000 genomes]
rs1570413	1.00[AMR][1000 genomes]
rs1592707	1.00[AMR][1000 genomes]
rs1592708	1.00[AMR][1000 genomes]
rs1923758	1.00[AMR][1000 genomes]
rs1951697	0.85[AMR][1000 genomes]
rs1998433	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2146484	0.87[AMR][1000 genomes]
rs2146485	1.00[AMR][1000 genomes]
rs2160967	1.00[AMR][1000 genomes]
rs2181373	1.00[AMR][1000 genomes]
rs2359119	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2821099	1.00[AMR][1000 genomes]
rs3888104	1.00[AMR][1000 genomes]
rs3902057	1.00[AMR][1000 genomes]
rs4244150	0.87[AMR][1000 genomes]
rs4335404	1.00[AMR][1000 genomes]
rs4428919	0.87[AMR][1000 genomes]
rs4989560	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6428401	0.87[AMR][1000 genomes]
rs6428402	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6428403	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6428405	1.00[AMR][1000 genomes]
rs6428406	1.00[AMR][1000 genomes]
rs6656674	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6670147	0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6678776	0.87[AMR][1000 genomes]
rs6684593	1.00[AMR][1000 genomes]
rs6686241	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6689739	1.00[AMR][1000 genomes]
rs6690015	0.87[AMR][1000 genomes]
rs6691940	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6694254	0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7514167	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7515749	1.00[AMR][1000 genomes]
rs7525737	0.87[AMR][1000 genomes]
rs7530158	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs927511	1.00[AMR][1000 genomes]
rs942050	0.87[AMR][1000 genomes]
rs980370	1.00[AMR][1000 genomes]
rs980371	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528460	chr1:196542567-197446702	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1014039	chr1:197311285-197529212	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:197439000-197442400	Enhancers	Fetal Brain Male	brain
2	chr1:197439000-197442600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:197440800-197456200	Weak transcription	Brain Anterior Caudate	brain
4	chr1:197441000-197442400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr1:197441200-197454400	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr1:197441200-197456000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr1:197441400-197442400	Enhancers	Fetal Intestine Large	intestine
8	chr1:197441400-197456400	Weak transcription	Brain Germinal Matrix	brain

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