Variant report

Variant	rs6690015
Chromosome Location	chr1:197455571-197455572
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:197439603..197440481-chr1:197454792..197455642,4	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1022908	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1033826	0.87[AMR][1000 genomes]
rs10801606	0.87[AMR][1000 genomes]
rs10922235	0.87[AMR][1000 genomes]
rs1421390	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1421391	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1421394	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1570412	0.87[AMR][1000 genomes]
rs1570413	0.87[AMR][1000 genomes]
rs1592707	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1592708	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1923758	0.87[AMR][1000 genomes]
rs1998433	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2146485	0.87[AMR][1000 genomes]
rs2160967	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2181373	0.87[AMR][1000 genomes]
rs2359119	0.87[AMR][1000 genomes]
rs2821099	0.87[AMR][1000 genomes]
rs3888104	0.87[AMR][1000 genomes]
rs3902057	0.87[AMR][1000 genomes]
rs4335404	0.87[AMR][1000 genomes]
rs4989560	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6428402	0.87[AMR][1000 genomes]
rs6428403	0.88[AFR][1000 genomes]
rs6428405	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6428406	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6428407	0.87[AFR][1000 genomes]
rs6656674	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6664766	0.87[AMR][1000 genomes]
rs6670147	0.87[AMR][1000 genomes]
rs6684593	0.87[AMR][1000 genomes]
rs6686241	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6689739	0.87[AMR][1000 genomes]
rs6691940	0.87[AMR][1000 genomes]
rs6694254	0.87[AMR][1000 genomes]
rs7514167	0.87[AMR][1000 genomes]
rs7515749	0.87[AMR][1000 genomes]
rs7530158	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs927511	0.87[AMR][1000 genomes]
rs980370	0.87[AMR][1000 genomes]
rs980371	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014039	chr1:197311285-197529212	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:197440800-197456200	Weak transcription	Brain Anterior Caudate	brain
2	chr1:197441200-197456000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr1:197441400-197456400	Weak transcription	Brain Germinal Matrix	brain
4	chr1:197454600-197455600	Enhancers	Placenta	Placenta
5	chr1:197454600-197456600	Enhancers	Pancreas	Pancrea
6	chr1:197455200-197456200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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