Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10789023	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10789024	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10888975	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11206810	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11206814	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11206816	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11206817	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11206818	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11206823	0.93[ASN][1000 genomes]
rs11206825	0.91[ASN][1000 genomes]
rs11589246	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12138516	0.82[ASN][1000 genomes]
rs12739002	0.82[ASN][1000 genomes]
rs1930761	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2210617	0.83[ASN][1000 genomes]
rs2896948	0.82[ASN][1000 genomes]
rs4128921	0.82[ASN][1000 genomes]
rs4244013	0.86[ASN][1000 genomes]
rs4912291	0.94[ASN][1000 genomes]
rs61772590	0.86[EUR][1000 genomes]
rs6682210	0.82[ASN][1000 genomes]
rs6690687	0.82[ASN][1000 genomes]
rs7418187	0.82[ASN][1000 genomes]
rs7528118	0.82[TSI][hapmap]
rs8016	0.97[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7525717	ACOT11	cis	cerebellum	SCAN

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56905400-56942600	Weak transcription	Gastric	stomach
2	chr1:56913800-56943200	Weak transcription	Aorta	Aorta
3	chr1:56915200-56935800	Weak transcription	NHLF	lung
4	chr1:56919200-56930000	Weak transcription	NHDF-Ad	bronchial
5	chr1:56919800-56934200	Weak transcription	Fetal Stomach	stomach
6	chr1:56922800-56929000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:56922800-56934200	Weak transcription	Fetal Muscle Leg	muscle
8	chr1:56923600-56930000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr1:56924000-56934200	Weak transcription	Right Atrium	heart
10	chr1:56924200-56931800	Weak transcription	Left Ventricle	heart
11	chr1:56924200-56942800	Weak transcription	Right Ventricle	heart
12	chr1:56926600-56927800	Enhancers	Liver	Liver
13	chr1:56926600-56927800	Enhancers	Fetal Intestine Small	intestine
14	chr1:56926600-56928200	Enhancers	Fetal Intestine Large	intestine
15	chr1:56926600-56928200	Enhancers	Fetal Thymus	thymus
16	chr1:56926800-56939000	Weak transcription	Esophagus	oesophagus
17	chr1:56927200-56927800	Enhancers	H9 Cell Line	embryonic stem cell
18	chr1:56927600-56927800	Enhancers	Stomach Mucosa	stomach
19	chr1:56927600-56928200	Enhancers	HepG2	liver

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