The 2.0 version of rSNPBase

Variant report

Variant rs12739002
Chromosome Location chr1:56936282-56936283
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:47 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:56905400-56942600 Weak transcription Gastric stomach
2 chr1:56913800-56943200 Weak transcription Aorta Aorta
3 chr1:56924200-56942800 Weak transcription Right Ventricle heart
4 chr1:56926800-56939000 Weak transcription Esophagus oesophagus
5 chr1:56929400-56942400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
6 chr1:56931400-56939200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
7 chr1:56931800-56936400 Weak transcription Fetal Kidney kidney
8 chr1:56932000-56943000 Weak transcription ES-WA7 Cell Line embryonic stem cell
9 chr1:56934200-56936600 Enhancers NHDF-Ad bronchial
10 chr1:56934400-56942400 Weak transcription Fetal Muscle Trunk muscle
11 chr1:56934400-56942600 Weak transcription Duodenum Smooth Muscle Duodenum
12 chr1:56934600-56937200 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
13 chr1:56934600-56942600 Weak transcription Skeletal Muscle Male skeletal muscle
14 chr1:56934800-56936800 Enhancers Adipose Nuclei Adipose
15 chr1:56934800-56939000 Weak transcription Skeletal Muscle Female skeletal muscle
16 chr1:56934800-56943000 Weak transcription Psoas Muscle Psoas
17 chr1:56935000-56937400 Enhancers Monocytes-CD14+_RO01746 blood
18 chr1:56935000-56939800 Enhancers Primary monocytes fromperipheralblood blood
19 chr1:56935000-56939800 Enhancers Primary B cells from peripheral blood blood
20 chr1:56935200-56938800 Weak transcription Fetal Stomach stomach
21 chr1:56935200-56939000 Weak transcription Right Atrium heart
22 chr1:56935200-56939400 Weak transcription Left Ventricle heart
23 chr1:56935200-56939800 Enhancers Primary neutrophils fromperipheralblood blood
24 chr1:56935200-56942400 Weak transcription Fetal Muscle Leg muscle
25 chr1:56935400-56936400 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
26 chr1:56935400-56936800 Enhancers Brain Hippocampus Middle brain
27 chr1:56935400-56937200 Enhancers HUVEC blood vessel
28 chr1:56935400-56939600 Weak transcription Lung lung
29 chr1:56935800-56936400 Enhancers ES-UCSF4 Cell Line embryonic stem cell
30 chr1:56935800-56936400 Enhancers Cortex derived primary cultured neurospheres brain
31 chr1:56935800-56936400 Enhancers Fetal Intestine Small intestine
32 chr1:56935800-56936400 Enhancers Spleen Spleen
33 chr1:56935800-56936400 Enhancers NHLF lung
34 chr1:56935800-56937400 Enhancers Fetal Lung lung
35 chr1:56935800-56939400 Enhancers HepG2 liver
36 chr1:56936000-56936400 Enhancers Colon Smooth Muscle Colon
37 chr1:56936000-56936600 Enhancers Fetal Adrenal Gland Adrenal Gland
38 chr1:56936000-56937200 Enhancers Primary B cells from cord blood blood
39 chr1:56936000-56937200 Enhancers Stomach Mucosa stomach
40 chr1:56936000-56942600 Weak transcription Osteobl bone
41 chr1:56936200-56936400 Enhancers Brain Germinal Matrix brain
42 chr1:56936200-56936600 Enhancers Liver Liver
43 chr1:56936200-56936600 Enhancers Fetal Intestine Large intestine
44 chr1:56936200-56937800 Weak transcription GM12878-XiMat blood
45 chr1:56936200-56938600 Weak transcription Brain Anterior Caudate brain
46 chr1:56936200-56939000 Weak transcription Muscle Satellite Cultured Cells --
47 chr1:56936200-56939400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin

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Last update: Aug 31, 2015