Variant report

Variant	rs2780866
Chromosome Location	chr1:56928413-56928414
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10789022	0.81[ASN][1000 genomes]
rs10888973	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11206812	0.81[EUR][1000 genomes]
rs11206813	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11206820	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11206821	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11206822	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11206826	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12128107	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12138516	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs12140958	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12736058	0.94[EUR][1000 genomes]
rs12739002	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs12755498	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12755655	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2780869	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4128921	0.86[EUR][1000 genomes]
rs4628	0.81[AMR][1000 genomes]
rs6588636	0.81[ASN][1000 genomes]
rs6672624	0.94[EUR][1000 genomes]
rs6676745	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6682210	0.83[EUR][1000 genomes]
rs6682251	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6684123	0.81[EUR][1000 genomes]
rs6687845	0.94[EUR][1000 genomes]
rs6690687	0.82[EUR][1000 genomes]
rs6698812	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7418187	0.85[EUR][1000 genomes]
rs7522127	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7539463	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9803856	0.94[EUR][1000 genomes]
rs9803955	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56905400-56942600	Weak transcription	Gastric	stomach
2	chr1:56913800-56943200	Weak transcription	Aorta	Aorta
3	chr1:56915200-56935800	Weak transcription	NHLF	lung
4	chr1:56919200-56930000	Weak transcription	NHDF-Ad	bronchial
5	chr1:56919800-56934200	Weak transcription	Fetal Stomach	stomach
6	chr1:56922800-56929000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:56922800-56934200	Weak transcription	Fetal Muscle Leg	muscle
8	chr1:56923600-56930000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr1:56924000-56934200	Weak transcription	Right Atrium	heart
10	chr1:56924200-56931800	Weak transcription	Left Ventricle	heart
11	chr1:56924200-56942800	Weak transcription	Right Ventricle	heart
12	chr1:56926800-56939000	Weak transcription	Esophagus	oesophagus
13	chr1:56927800-56929800	Weak transcription	Stomach Mucosa	stomach
14	chr1:56927800-56930800	Weak transcription	Fetal Intestine Small	intestine
15	chr1:56927800-56931800	Weak transcription	Liver	Liver
16	chr1:56928200-56929000	Weak transcription	HepG2	liver

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