Variant report

Variant	rs11206820
Chromosome Location	chr1:56933835-56933836
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10789022	0.83[ASN][1000 genomes]
rs10888973	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10888974	0.82[ASN][1000 genomes]
rs11206813	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11206821	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11206822	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11206826	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12128107	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12140958	0.87[EUR][1000 genomes]
rs12736058	0.86[EUR][1000 genomes]
rs12755498	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12755655	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2780866	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2780867	0.82[ASN][1000 genomes]
rs2780869	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs36018890	0.82[ASN][1000 genomes]
rs4628	0.83[ASN][1000 genomes]
rs6588636	0.83[ASN][1000 genomes]
rs6672624	0.86[EUR][1000 genomes]
rs6676745	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6682251	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6687845	0.86[EUR][1000 genomes]
rs6698812	0.81[ASN][1000 genomes]
rs7516563	0.82[ASN][1000 genomes]
rs7522127	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7536157	0.82[ASN][1000 genomes]
rs7539463	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9803856	0.86[EUR][1000 genomes]
rs9803955	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56905400-56942600	Weak transcription	Gastric	stomach
2	chr1:56913800-56943200	Weak transcription	Aorta	Aorta
3	chr1:56915200-56935800	Weak transcription	NHLF	lung
4	chr1:56919800-56934200	Weak transcription	Fetal Stomach	stomach
5	chr1:56922800-56934200	Weak transcription	Fetal Muscle Leg	muscle
6	chr1:56924000-56934200	Weak transcription	Right Atrium	heart
7	chr1:56924200-56942800	Weak transcription	Right Ventricle	heart
8	chr1:56926800-56939000	Weak transcription	Esophagus	oesophagus
9	chr1:56929200-56935800	Weak transcription	HepG2	liver
10	chr1:56929400-56942400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr1:56930400-56934200	Weak transcription	NHDF-Ad	bronchial
12	chr1:56930400-56935600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr1:56931200-56935800	Weak transcription	Fetal Intestine Small	intestine
14	chr1:56931400-56934000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr1:56931400-56936000	Weak transcription	Stomach Mucosa	stomach
16	chr1:56931400-56939200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr1:56931800-56936400	Weak transcription	Fetal Kidney	kidney
18	chr1:56932000-56943000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr1:56932400-56935800	Weak transcription	Spleen	Spleen
20	chr1:56932600-56936200	Weak transcription	Liver	Liver
21	chr1:56932800-56934200	Weak transcription	Left Ventricle	heart
22	chr1:56933000-56935000	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr1:56933200-56935200	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr1:56933400-56935000	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr1:56933800-56934400	Enhancers	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links