Variant report

Variant	rs36018890
Chromosome Location	chr1:56942971-56942972
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:56937800..56940373-chr1:56942225..56944887,2	K562	blood:
2	chr1:56941233..56944264-chr1:57041554..57045074,3	MCF-7	breast:
3	chr1:56935156..56937645-chr1:56940992..56943740,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10789022	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10888973	0.87[ASN][1000 genomes]
rs10888974	0.93[ASN][1000 genomes]
rs11206820	0.82[ASN][1000 genomes]
rs11206822	0.84[ASN][1000 genomes]
rs11206823	0.86[EUR][1000 genomes]
rs11206825	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11206826	0.83[ASN][1000 genomes]
rs11206828	0.85[ASN][1000 genomes]
rs1134183	0.87[ASN][1000 genomes]
rs11811433	0.87[ASN][1000 genomes]
rs12128107	0.85[ASN][1000 genomes]
rs12755498	0.85[ASN][1000 genomes]
rs12755655	0.85[ASN][1000 genomes]
rs2780867	0.93[ASN][1000 genomes]
rs4554741	0.87[ASN][1000 genomes]
rs4638151	0.86[ASN][1000 genomes]
rs4912291	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4912303	0.85[ASN][1000 genomes]
rs6588636	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6588637	0.88[ASN][1000 genomes]
rs6664934	0.89[ASN][1000 genomes]
rs6676745	0.84[ASN][1000 genomes]
rs7516563	0.93[ASN][1000 genomes]
rs7532239	0.89[ASN][1000 genomes]
rs7536157	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56913800-56943200	Weak transcription	Aorta	Aorta
2	chr1:56932000-56943000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr1:56934800-56943000	Weak transcription	Psoas Muscle	Psoas
4	chr1:56942400-56943000	Enhancers	Fetal Muscle Leg	muscle
5	chr1:56942400-56943200	Flanking Active TSS	HepG2	liver
6	chr1:56942600-56943000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
7	chr1:56942600-56943000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr1:56942600-56943000	Enhancers	H9 Cell Line	embryonic stem cell
9	chr1:56942600-56943000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr1:56942600-56943000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr1:56942600-56943000	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
12	chr1:56942600-56943000	Bivalent Enhancer	Primary B cells from peripheral blood	blood
13	chr1:56942600-56943000	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr1:56942600-56943000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr1:56942600-56943000	Flanking Active TSS	Liver	Liver
16	chr1:56942600-56943000	Enhancers	Brain Anterior Caudate	brain
17	chr1:56942600-56943000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
18	chr1:56942600-56943000	Flanking Active TSS	Colon Smooth Muscle	Colon
19	chr1:56942600-56943000	Enhancers	Esophagus	oesophagus
20	chr1:56942600-56943000	Enhancers	Fetal Intestine Large	intestine
21	chr1:56942600-56943000	Enhancers	Placenta	Placenta
22	chr1:56942600-56943000	Enhancers	Gastric	stomach
23	chr1:56942600-56943000	Enhancers	Pancreas	Pancrea
24	chr1:56942600-56943000	Enhancers	Osteobl	bone
25	chr1:56942600-56943200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
26	chr1:56942600-56943200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr1:56942600-56943200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
28	chr1:56942600-56943200	Flanking Active TSS	Stomach Smooth Muscle	stomach
29	chr1:56942600-56944800	Enhancers	Spleen	Spleen
30	chr1:56942800-56943000	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
31	chr1:56942800-56943000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr1:56942800-56943000	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr1:56942800-56943000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr1:56942800-56943000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr1:56942800-56943000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
36	chr1:56942800-56943000	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
37	chr1:56942800-56943000	Flanking Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr1:56942800-56943000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr1:56942800-56943000	Bivalent Enhancer	Primary hematopoietic stem cells	blood
40	chr1:56942800-56943000	Flanking Active TSS	Brain Angular Gyrus	brain
41	chr1:56942800-56943000	Enhancers	Colonic Mucosa	Colon
42	chr1:56942800-56943000	Flanking Active TSS	Duodenum Mucosa	Duodenum
43	chr1:56942800-56943000	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
44	chr1:56942800-56943000	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
45	chr1:56942800-56943000	Flanking Active TSS	Fetal Intestine Small	intestine
46	chr1:56942800-56943000	Flanking Active TSS	Fetal Kidney	kidney
47	chr1:56942800-56943000	Flanking Active TSS	Left Ventricle	heart
48	chr1:56942800-56943000	Flanking Active TSS	Lung	lung
49	chr1:56942800-56943000	Enhancers	Ovary	ovary
50	chr1:56942800-56943000	Enhancers	Placenta Amnion	Placenta Amnion

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