Variant report

Variant	rs6676745
Chromosome Location	chr1:56934466-56934467
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10789022	0.85[ASN][1000 genomes]
rs10888973	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10888974	0.84[ASN][1000 genomes]
rs11206813	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11206820	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11206821	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11206822	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11206826	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12128107	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12138516	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12140958	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12736058	0.92[EUR][1000 genomes]
rs12739002	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12755498	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12755655	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2780866	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2780867	0.84[ASN][1000 genomes]
rs2780869	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs36018890	0.84[ASN][1000 genomes]
rs4128921	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4628	0.90[CHB][hapmap];0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6588636	0.85[ASN][1000 genomes]
rs6588637	0.81[ASN][1000 genomes]
rs6672624	0.92[EUR][1000 genomes]
rs6682210	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6682251	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6684123	0.84[EUR][1000 genomes]
rs6687845	0.92[EUR][1000 genomes]
rs6690687	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6698812	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7418187	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7516563	0.84[ASN][1000 genomes]
rs7522127	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7536157	0.84[ASN][1000 genomes]
rs7539463	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9803856	0.92[EUR][1000 genomes]
rs9803955	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56905400-56942600	Weak transcription	Gastric	stomach
2	chr1:56913800-56943200	Weak transcription	Aorta	Aorta
3	chr1:56915200-56935800	Weak transcription	NHLF	lung
4	chr1:56924200-56942800	Weak transcription	Right Ventricle	heart
5	chr1:56926800-56939000	Weak transcription	Esophagus	oesophagus
6	chr1:56929200-56935800	Weak transcription	HepG2	liver
7	chr1:56929400-56942400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr1:56930400-56935600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr1:56931200-56935800	Weak transcription	Fetal Intestine Small	intestine
10	chr1:56931400-56936000	Weak transcription	Stomach Mucosa	stomach
11	chr1:56931400-56939200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr1:56931800-56936400	Weak transcription	Fetal Kidney	kidney
13	chr1:56932000-56943000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr1:56932400-56935800	Weak transcription	Spleen	Spleen
15	chr1:56932600-56936200	Weak transcription	Liver	Liver
16	chr1:56933000-56935000	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr1:56933200-56935200	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr1:56933400-56935000	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr1:56934200-56934600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr1:56934200-56934600	Enhancers	Muscle Satellite Cultured Cells	--
21	chr1:56934200-56934600	Enhancers	Fetal Lung	lung
22	chr1:56934200-56934600	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr1:56934200-56934800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr1:56934200-56934800	Flanking Active TSS	Adipose Nuclei	Adipose
25	chr1:56934200-56934800	Enhancers	HSMMtube	muscle
26	chr1:56934200-56935200	Enhancers	Fetal Muscle Leg	muscle
27	chr1:56934200-56935200	Enhancers	Fetal Stomach	stomach
28	chr1:56934200-56935200	Enhancers	Left Ventricle	heart
29	chr1:56934200-56935200	Enhancers	Right Atrium	heart
30	chr1:56934200-56936600	Enhancers	NHDF-Ad	bronchial
31	chr1:56934400-56934600	Enhancers	Psoas Muscle	Psoas
32	chr1:56934400-56934800	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr1:56934400-56935400	Enhancers	Fetal Thymus	thymus
34	chr1:56934400-56942400	Weak transcription	Fetal Muscle Trunk	muscle
35	chr1:56934400-56942600	Weak transcription	Duodenum Smooth Muscle	Duodenum

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