Variant report

Variant	rs11206826
Chromosome Location	chr1:56944495-56944496
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:56943708..56945910-chr1:56967144..56969336,2	K562	blood:
2	chr1:56937800..56940373-chr1:56942225..56944887,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10789022	0.84[ASN][1000 genomes]
rs10888973	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10888974	0.86[ASN][1000 genomes]
rs11206813	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11206820	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11206821	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11206822	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12128107	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12138516	0.84[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs12140958	0.91[EUR][1000 genomes]
rs12736058	0.86[EUR][1000 genomes]
rs12739002	0.84[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs12755498	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12755655	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2780866	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2780867	0.86[ASN][1000 genomes]
rs2780869	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs36018890	0.83[ASN][1000 genomes]
rs4628	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6588636	0.87[ASN][1000 genomes]
rs6588637	0.83[ASN][1000 genomes]
rs6664934	0.82[ASN][1000 genomes]
rs6672624	0.86[EUR][1000 genomes]
rs6676745	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6682210	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs6682251	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6684123	0.83[AFR][1000 genomes]
rs6687845	0.86[EUR][1000 genomes]
rs6690687	0.80[EUR][1000 genomes]
rs6698812	0.84[ASN][1000 genomes]
rs7516563	0.86[ASN][1000 genomes]
rs7522127	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7532239	0.82[ASN][1000 genomes]
rs7536157	0.86[ASN][1000 genomes]
rs7539463	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9803856	0.86[EUR][1000 genomes]
rs9803955	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56942600-56944800	Enhancers	Spleen	Spleen
2	chr1:56943600-56944600	Enhancers	Lung	lung
3	chr1:56943800-56944600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr1:56943800-56944600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr1:56943800-56944600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr1:56943800-56944600	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr1:56943800-56944600	Enhancers	Liver	Liver
8	chr1:56943800-56944600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr1:56943800-56944800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr1:56943800-56944800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr1:56943800-56944800	Enhancers	Fetal Kidney	kidney
12	chr1:56943800-56944800	Enhancers	Left Ventricle	heart
13	chr1:56943800-56944800	Enhancers	Pancreas	Pancrea
14	chr1:56943800-56944800	Enhancers	Right Ventricle	heart
15	chr1:56943800-56945000	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
16	chr1:56943800-56945200	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
17	chr1:56943800-56945200	Enhancers	Placenta	Placenta
18	chr1:56943800-56948200	Weak transcription	HUVEC	blood vessel
19	chr1:56943800-56957000	Weak transcription	HSMM	muscle
20	chr1:56943800-56957200	Weak transcription	Psoas Muscle	Psoas
21	chr1:56943800-56957400	Weak transcription	Fetal Intestine Small	intestine
22	chr1:56943800-56957600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr1:56943800-56959400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr1:56944000-56944600	Enhancers	Adipose Nuclei	Adipose
25	chr1:56944000-56944800	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
26	chr1:56944000-56944800	Enhancers	Fetal Stomach	stomach
27	chr1:56944000-56957400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr1:56944200-56944600	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr1:56944200-56944600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr1:56944200-56944600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
31	chr1:56944200-56944600	Enhancers	Sigmoid Colon	Sigmoid Colon
32	chr1:56944200-56944800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr1:56944200-56944800	Bivalent Enhancer	Brain Cingulate Gyrus	brain
34	chr1:56944400-56944600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr1:56944400-56944600	Flanking Active TSS	Esophagus	oesophagus
36	chr1:56944400-56944600	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
37	chr1:56944400-56944800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
38	chr1:56944400-56944800	Bivalent Enhancer	Rectal Mucosa Donor 31	rectum
39	chr1:56944400-56949400	Enhancers	HepG2	liver
40	chr1:56944400-56957200	Weak transcription	Fetal Muscle Trunk	muscle
41	chr1:56944400-56957200	Weak transcription	Fetal Muscle Leg	muscle
42	chr1:56944400-56959600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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