Variant report

Variant	rs10789022
Chromosome Location	chr1:56940134-56940135
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:56937800..56940373-chr1:56942225..56944887,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10888973	0.88[ASN][1000 genomes]
rs10888974	0.94[ASN][1000 genomes]
rs11206820	0.83[ASN][1000 genomes]
rs11206822	0.85[ASN][1000 genomes]
rs11206823	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11206825	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11206826	0.84[ASN][1000 genomes]
rs11206828	0.86[ASN][1000 genomes]
rs1134183	0.88[ASN][1000 genomes]
rs11811433	0.88[ASN][1000 genomes]
rs12128107	0.86[ASN][1000 genomes]
rs12755498	0.86[ASN][1000 genomes]
rs12755655	0.86[ASN][1000 genomes]
rs2780866	0.81[ASN][1000 genomes]
rs2780867	0.94[ASN][1000 genomes]
rs36018890	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4554741	0.88[ASN][1000 genomes]
rs4628	0.94[CHB][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs4638151	0.88[ASN][1000 genomes]
rs4912291	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4912303	0.86[ASN][1000 genomes]
rs6588636	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6588637	0.89[ASN][1000 genomes]
rs6664934	0.90[ASN][1000 genomes]
rs6676745	0.85[ASN][1000 genomes]
rs7516563	0.94[ASN][1000 genomes]
rs7532239	0.90[ASN][1000 genomes]
rs7536157	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56905400-56942600	Weak transcription	Gastric	stomach
2	chr1:56913800-56943200	Weak transcription	Aorta	Aorta
3	chr1:56924200-56942800	Weak transcription	Right Ventricle	heart
4	chr1:56929400-56942400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr1:56932000-56943000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr1:56934400-56942400	Weak transcription	Fetal Muscle Trunk	muscle
7	chr1:56934400-56942600	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr1:56934600-56942600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr1:56934800-56943000	Weak transcription	Psoas Muscle	Psoas
10	chr1:56935200-56942400	Weak transcription	Fetal Muscle Leg	muscle
11	chr1:56936000-56942600	Weak transcription	Osteobl	bone
12	chr1:56936400-56942600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr1:56936600-56942600	Weak transcription	Fetal Kidney	kidney
14	chr1:56938600-56940200	Enhancers	Liver	Liver
15	chr1:56938600-56940400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr1:56938600-56942600	Weak transcription	Placenta	Placenta
17	chr1:56938800-56940200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr1:56939000-56940200	Enhancers	NHDF-Ad	bronchial
19	chr1:56939000-56940400	Enhancers	Brain Substantia Nigra	brain
20	chr1:56939000-56942600	Weak transcription	Duodenum Mucosa	Duodenum
21	chr1:56939200-56940200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr1:56939200-56940200	Enhancers	Brain Hippocampus Middle	brain
23	chr1:56939200-56940400	Enhancers	Brain Cingulate Gyrus	brain
24	chr1:56939200-56940600	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr1:56939400-56940200	Enhancers	Brain Angular Gyrus	brain
26	chr1:56939400-56940200	Enhancers	Fetal Heart	heart
27	chr1:56939400-56940200	Enhancers	Left Ventricle	heart
28	chr1:56939400-56941200	Weak transcription	HepG2	liver
29	chr1:56939600-56940200	Enhancers	Brain Inferior Temporal Lobe	brain
30	chr1:56939600-56940200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
31	chr1:56939600-56942800	Weak transcription	Fetal Brain Female	brain
32	chr1:56939600-56942800	Weak transcription	NH-A	brain
33	chr1:56939800-56941600	Weak transcription	Stomach Mucosa	stomach
34	chr1:56939800-56942600	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr1:56939800-56942600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr1:56939800-56942600	Weak transcription	Adipose Nuclei	Adipose
37	chr1:56939800-56942600	Weak transcription	Esophagus	oesophagus
38	chr1:56939800-56942600	Weak transcription	Fetal Lung	lung
39	chr1:56939800-56942600	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr1:56939800-56942600	Weak transcription	Spleen	Spleen
41	chr1:56939800-56942800	Weak transcription	Brain Germinal Matrix	brain
42	chr1:56940000-56941800	Weak transcription	Lung	lung
43	chr1:56940000-56942600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr1:56940000-56942600	Weak transcription	Brain Anterior Caudate	brain
45	chr1:56940000-56942600	Weak transcription	Colon Smooth Muscle	Colon
46	chr1:56940000-56942600	Weak transcription	Fetal Stomach	stomach
47	chr1:56940000-56942600	Weak transcription	Pancreas	Pancrea
48	chr1:56940000-56942600	Weak transcription	Right Atrium	heart
49	chr1:56940000-56942600	Weak transcription	NHLF	lung
50	chr1:56940000-56942800	Weak transcription	Muscle Satellite Cultured Cells	--

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