Variant report

Variant	rs7526579
Chromosome Location	chr1:211185917-211185918
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12025525	0.84[AFR][1000 genomes]
rs12026311	0.87[AFR][1000 genomes]
rs12026374	0.87[AFR][1000 genomes]
rs12030715	0.88[AFR][1000 genomes]
rs12042686	0.92[CEU][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12407609	0.84[AFR][1000 genomes]
rs1501557	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1777250	0.81[CHD][hapmap]
rs1875438	0.83[CHD][hapmap]
rs4570464	0.84[AFR][1000 genomes]
rs4575146	0.84[AFR][1000 genomes]
rs4951693	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.90[GIH][hapmap];0.91[JPT][hapmap];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4951694	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4951695	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.80[TSI][hapmap];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6540636	0.81[LWK][hapmap];0.89[MKK][hapmap];0.83[YRI][hapmap]
rs6678568	0.84[LWK][hapmap];0.89[MKK][hapmap];0.83[YRI][hapmap]
rs6680997	0.84[LWK][hapmap]
rs7514606	0.87[LWK][hapmap];0.90[AFR][1000 genomes]
rs7524268	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7526579	ELK4	cis	parietal	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211180600-211187000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr1:211181200-211186600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:211181800-211193800	Weak transcription	Brain Anterior Caudate	brain
4	chr1:211182000-211186600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr1:211182800-211228600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr1:211184800-211198600	Weak transcription	Brain Hippocampus Middle	brain
7	chr1:211185000-211186600	Strong transcription	HSMM	muscle
8	chr1:211185200-211194000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr1:211185400-211191800	Weak transcription	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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