Variant report

Variant	rs7527720
Chromosome Location	chr1:178969491-178969492
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs58305637	1.00[AMR][1000 genomes]
rs73043669	1.00[AMR][1000 genomes]
rs73043683	1.00[AMR][1000 genomes]
rs73043692	1.00[AMR][1000 genomes]
rs73045635	1.00[AMR][1000 genomes]
rs73045663	1.00[AMR][1000 genomes]
rs7532080	0.85[AFR][1000 genomes]
rs7555481	0.87[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv441722	chr1:178953746-178976729	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv825509	chr1:178963180-178975836	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:178967000-178971400	Weak transcription	Ovary	ovary
2	chr1:178967600-178971400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:178968400-178970600	Weak transcription	Fetal Stomach	stomach
4	chr1:178968400-178971400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr1:178968400-178971600	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr1:178968600-178970600	Weak transcription	Stomach Smooth Muscle	stomach
7	chr1:178968600-178971800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr1:178969400-178971400	Weak transcription	HepG2	liver
9	chr1:178969400-178971600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr1:178969400-178971600	Weak transcription	Colon Smooth Muscle	Colon
11	chr1:178969400-178971600	Weak transcription	Rectal Smooth Muscle	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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