Variant report

Variant	rs7532028
Chromosome Location	chr1:10077561-10077562
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10127541	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11805696	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11806378	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13373975	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13374214	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17034544	1.00[YRI][hapmap]
rs57314761	1.00[AMR][1000 genomes]
rs57841357	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58900002	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59570346	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60413811	1.00[AMR][1000 genomes]
rs60495933	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6684466	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6702986	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72861450	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7532599	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7535103	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3385337	chr1:9105242-10082223	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	549 gene(s)	inside rSNPs	diseases
2	esv3417409	chr1:9683992-10241703	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	nsv1012469	chr1:9925714-10147796	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv1012301	chr1:9963962-10118393	Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	nsv534853	chr1:9963962-10118393	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
6	nsv1001742	chr1:9971776-10116767	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:10072800-10080200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:10074400-10078200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr1:10074600-10092400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr1:10076200-10078400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:10076400-10081600	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr1:10076400-10081800	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr1:10076400-10082200	Weak transcription	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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