Variant report

Variant	rs7534260
Chromosome Location	chr1:173680991-173680992
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:173675475..173677771-chr1:173680197..173682201,2	K562	blood:
2	chr1:173680351..173683002-chr1:173689911..173692365,2	K562	blood:
3	chr1:173678046..173681772-chr1:173681873..173685345,5	K562	blood:
4	chr1:173679565..173681727-chr1:173834701..173836645,2	MCF-7	breast:
5	chr1:173679457..173681127-chr1:173688388..173689983,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000208317	Chromatin interaction
ENSG00000234741	Chromatin interaction
ENSG00000076321	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs2126126	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28865644	0.85[AFR][1000 genomes]
rs35515638	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56660187	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57520670	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58193236	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58356308	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60228238	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60656154	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61286800	0.89[AFR][1000 genomes]
rs6425259	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs6425260	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs6663103	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6674573	1.00[AMR][1000 genomes]
rs6694637	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73031308	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73031331	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73033104	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73033138	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73035115	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73035123	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73035125	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73035130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73035152	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73035157	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73035162	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73037024	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73037030	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73037052	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73037062	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7516013	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7534982	0.90[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7537349	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7542542	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7542780	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012384	chr1:173614816-173974426	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	294 gene(s)	inside rSNPs	diseases
2	nsv1014827	chr1:173653453-173692470	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173679800-173681000	Enhancers	HepG2	liver
2	chr1:173680000-173681000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:173680200-173681000	Enhancers	K562	blood

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