Variant report

Variant	rs7536341
Chromosome Location	chr1:84107837-84107838
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10157369	0.82[EUR][1000 genomes]
rs11580898	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11586101	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12120817	0.83[EUR][1000 genomes]
rs12120992	0.83[EUR][1000 genomes]
rs12121952	0.83[EUR][1000 genomes]
rs12127196	0.83[EUR][1000 genomes]
rs12127988	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12132624	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12132861	0.83[EUR][1000 genomes]
rs12135099	0.83[EUR][1000 genomes]
rs12138207	0.83[EUR][1000 genomes]
rs12138333	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12138926	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12138955	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6576912	0.83[EUR][1000 genomes]
rs6576913	0.83[EUR][1000 genomes]
rs6678773	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84105400-84112400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr1:84105800-84108000	Enhancers	Fetal Heart	heart
3	chr1:84106800-84108600	Enhancers	Fetal Muscle Leg	muscle
4	chr1:84106800-84108600	Enhancers	Fetal Stomach	stomach
5	chr1:84106800-84108600	Enhancers	Fetal Thymus	thymus
6	chr1:84107000-84108200	Enhancers	Small Intestine	intestine
7	chr1:84107000-84108600	Enhancers	Lung	lung
8	chr1:84107400-84108000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr1:84107400-84108000	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr1:84107400-84108000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr1:84107400-84108200	Enhancers	NHLF	lung
12	chr1:84107400-84108400	Enhancers	Dnd41	blood
13	chr1:84107400-84108600	Enhancers	Ovary	ovary
14	chr1:84107600-84108000	Enhancers	Duodenum Smooth Muscle	Duodenum
15	chr1:84107600-84108000	Enhancers	Stomach Mucosa	stomach
16	chr1:84107600-84108000	Flanking Active TSS	Stomach Smooth Muscle	stomach
17	chr1:84107600-84108000	Enhancers	NHDF-Ad	bronchial
18	chr1:84107600-84108200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr1:84107600-84108200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr1:84107600-84108600	Enhancers	Colon Smooth Muscle	Colon
21	chr1:84107600-84108600	Enhancers	Fetal Muscle Trunk	muscle
22	chr1:84107800-84108000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr1:84107800-84108000	Enhancers	Thymus	Thymus
24	chr1:84107800-84108200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr1:84107800-84108200	Enhancers	Rectal Smooth Muscle	rectum
26	chr1:84107800-84108600	Enhancers	Adipose Nuclei	Adipose
27	chr1:84107800-84108600	Enhancers	Fetal Lung	lung
28	chr1:84107800-84108600	Enhancers	Right Atrium	heart
29	chr1:84107800-84110800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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