Variant report

Variant	rs6576913
Chromosome Location	chr1:84106225-84106226
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11163780	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11580898	0.83[EUR][1000 genomes]
rs11586101	0.83[EUR][1000 genomes]
rs12090287	1.00[ASN][1000 genomes]
rs12117386	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12117716	1.00[ASN][1000 genomes]
rs12120817	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12120992	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12121952	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12123247	1.00[ASN][1000 genomes]
rs12125932	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12127196	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12127988	0.82[EUR][1000 genomes]
rs12132624	0.83[EUR][1000 genomes]
rs12132861	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12135099	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12135764	1.00[ASN][1000 genomes]
rs12138207	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12138333	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12138926	0.81[EUR][1000 genomes]
rs12138955	0.83[EUR][1000 genomes]
rs12139202	1.00[ASN][1000 genomes]
rs12143951	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12145760	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41525348	1.00[ASN][1000 genomes]
rs4256830	1.00[ASN][1000 genomes]
rs4282844	1.00[ASN][1000 genomes]
rs4363434	1.00[ASN][1000 genomes]
rs4370778	1.00[ASN][1000 genomes]
rs4437897	1.00[ASN][1000 genomes]
rs58842909	1.00[ASN][1000 genomes]
rs61483809	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6576912	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6576916	1.00[ASN][1000 genomes]
rs6678773	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6690381	1.00[ASN][1000 genomes]
rs72709106	1.00[ASN][1000 genomes]
rs74096420	1.00[ASN][1000 genomes]
rs74096423	1.00[ASN][1000 genomes]
rs7536341	0.83[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6576913	TTLL7	cis	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84104400-84107800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr1:84104600-84107600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:84105400-84106600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:84105400-84106800	Weak transcription	Fetal Muscle Leg	muscle
5	chr1:84105400-84112400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr1:84105800-84106400	Enhancers	Brain Germinal Matrix	brain
7	chr1:84105800-84106800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr1:84105800-84108000	Enhancers	Fetal Heart	heart
9	chr1:84106000-84106400	Weak transcription	Fetal Lung	lung

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