Variant report
| Variant | rs6576916 |
|---|---|
| Chromosome Location | chr1:84128930-84128931 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs11163780 | 1.00[ASN][1000 genomes] |
| rs12090287 | 1.00[ASN][1000 genomes] |
| rs12117386 | 1.00[ASN][1000 genomes] |
| rs12117716 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12120817 | 1.00[ASN][1000 genomes] |
| rs12120992 | 1.00[ASN][1000 genomes] |
| rs12121952 | 1.00[ASN][1000 genomes] |
| rs12123247 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12125932 | 1.00[ASN][1000 genomes] |
| rs12127196 | 1.00[ASN][1000 genomes] |
| rs12132861 | 1.00[ASN][1000 genomes] |
| rs12135099 | 1.00[ASN][1000 genomes] |
| rs12135764 | 1.00[ASN][1000 genomes] |
| rs12138207 | 1.00[ASN][1000 genomes] |
| rs12139202 | 1.00[ASN][1000 genomes] |
| rs12143951 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs12145760 | 1.00[ASN][1000 genomes] |
| rs41525348 | 1.00[ASN][1000 genomes] |
| rs4256830 | 1.00[ASN][1000 genomes] |
| rs4282844 | 1.00[ASN][1000 genomes] |
| rs4363434 | 1.00[ASN][1000 genomes] |
| rs4370778 | 1.00[ASN][1000 genomes] |
| rs4437897 | 1.00[ASN][1000 genomes] |
| rs58842909 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61483809 | 1.00[ASN][1000 genomes] |
| rs6576912 | 1.00[ASN][1000 genomes] |
| rs6576913 | 1.00[ASN][1000 genomes] |
| rs6678773 | 1.00[ASN][1000 genomes] |
| rs6690381 | 0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72709106 | 1.00[ASN][1000 genomes] |
| rs74096420 | 1.00[ASN][1000 genomes] |
| rs74096423 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3352448 | chr1:84128871-84129185 | Weak transcription | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:84122800-84131800 | Weak transcription | Pancreas | Pancrea |
| 2 | chr1:84126400-84132000 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
