Variant report

Variant	rs12125932
Chromosome Location	chr1:84090165-84090166
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11163780	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12090287	1.00[ASN][1000 genomes]
rs12117386	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12117716	1.00[ASN][1000 genomes]
rs12120817	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12120992	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12121952	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12123247	1.00[ASN][1000 genomes]
rs12127196	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12132861	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12135099	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12135764	1.00[ASN][1000 genomes]
rs12138207	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12139202	1.00[ASN][1000 genomes]
rs12143951	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12145760	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41525348	1.00[ASN][1000 genomes]
rs4256830	1.00[ASN][1000 genomes]
rs4282844	1.00[ASN][1000 genomes]
rs4363434	1.00[ASN][1000 genomes]
rs4370778	1.00[ASN][1000 genomes]
rs4437897	1.00[ASN][1000 genomes]
rs58842909	1.00[ASN][1000 genomes]
rs61483809	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6576912	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6576913	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6576916	1.00[ASN][1000 genomes]
rs6678773	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6690381	1.00[ASN][1000 genomes]
rs72709106	1.00[ASN][1000 genomes]
rs74096420	1.00[ASN][1000 genomes]
rs74096423	1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12125932	TTLL7	cis	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84081400-84090800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:84081400-84091800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr1:84084600-84096800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr1:84085000-84092000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr1:84085800-84091600	Weak transcription	Fetal Brain Female	brain
6	chr1:84086400-84091200	Weak transcription	Fetal Thymus	thymus
7	chr1:84086400-84091800	Weak transcription	Thymus	Thymus
8	chr1:84088000-84095800	Weak transcription	Pancreas	Pancrea
9	chr1:84090000-84092000	Weak transcription	Fetal Brain Male	brain

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