Variant report
| Variant | rs6690381 |
|---|---|
| Chromosome Location | chr1:84155739-84155740 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:58)
| rs_ID | r2[population] |
|---|---|
| rs10489508 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs11163780 | 1.00[ASN][1000 genomes] |
| rs12090287 | 1.00[ASN][1000 genomes] |
| rs12116522 | 1.00[ASN][1000 genomes] |
| rs12117386 | 1.00[ASN][1000 genomes] |
| rs12117716 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12120801 | 1.00[ASN][1000 genomes] |
| rs12120817 | 1.00[ASN][1000 genomes] |
| rs12120992 | 1.00[ASN][1000 genomes] |
| rs12121952 | 1.00[ASN][1000 genomes] |
| rs12123247 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12123323 | 1.00[ASN][1000 genomes] |
| rs12125111 | 1.00[ASN][1000 genomes] |
| rs12125932 | 1.00[ASN][1000 genomes] |
| rs12127196 | 1.00[ASN][1000 genomes] |
| rs12127657 | 1.00[ASN][1000 genomes] |
| rs12128942 | 1.00[ASN][1000 genomes] |
| rs12132861 | 1.00[ASN][1000 genomes] |
| rs12135099 | 1.00[ASN][1000 genomes] |
| rs12135764 | 1.00[ASN][1000 genomes] |
| rs12138207 | 1.00[ASN][1000 genomes] |
| rs12139202 | 1.00[ASN][1000 genomes] |
| rs12139383 | 1.00[ASN][1000 genomes] |
| rs12141004 | 1.00[ASN][1000 genomes] |
| rs12142059 | 1.00[ASN][1000 genomes] |
| rs12143951 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs12144066 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs12144704 | 1.00[ASN][1000 genomes] |
| rs12145472 | 1.00[ASN][1000 genomes] |
| rs12145760 | 1.00[ASN][1000 genomes] |
| rs2006 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs2031371 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs2147394 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs2181901 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs41293003 | 1.00[ASN][1000 genomes] |
| rs41293005 | 1.00[ASN][1000 genomes] |
| rs41423448 | 1.00[ASN][1000 genomes] |
| rs41525348 | 1.00[ASN][1000 genomes] |
| rs4256830 | 1.00[ASN][1000 genomes] |
| rs4282844 | 1.00[ASN][1000 genomes] |
| rs4363434 | 1.00[ASN][1000 genomes] |
| rs4370778 | 1.00[ASN][1000 genomes] |
| rs4387198 | 1.00[ASN][1000 genomes] |
| rs4437897 | 1.00[ASN][1000 genomes] |
| rs45515591 | 1.00[ASN][1000 genomes] |
| rs58842909 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61483809 | 1.00[ASN][1000 genomes] |
| rs6576912 | 1.00[ASN][1000 genomes] |
| rs6576913 | 1.00[ASN][1000 genomes] |
| rs6576916 | 0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6678773 | 1.00[ASN][1000 genomes] |
| rs6700983 | 1.00[ASN][1000 genomes] |
| rs72709106 | 1.00[ASN][1000 genomes] |
| rs74096420 | 1.00[ASN][1000 genomes] |
| rs74096423 | 1.00[ASN][1000 genomes] |
| rs9645391 | 1.00[ASN][1000 genomes] |
| rs9645396 | 1.00[ASN][1000 genomes] |
| rs9645397 | 1.00[ASN][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:84154400-84156600 | Weak transcription | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
| 2 | chr1:84155200-84156600 | Enhancers | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
| 3 | chr1:84155400-84156400 | Enhancers | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
