The 2.0 version of rSNPBase

Variant report

Variant rs41423448
Chromosome Location chr1:84325805-84325806
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:38 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:84317000-84326000 Weak transcription Pancreas Pancrea
2 chr1:84320400-84326400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
3 chr1:84323400-84326000 Weak transcription Fetal Kidney kidney
4 chr1:84323400-84326200 Weak transcription HUES64 Cell Line embryonic stem cell
5 chr1:84323400-84327000 Weak transcription Fetal Heart heart
6 chr1:84324200-84326000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
7 chr1:84324200-84327000 Active TSS Pancreatic Islets Pancreatic Islet
8 chr1:84324600-84326000 Weak transcription Brain Angular Gyrus brain
9 chr1:84325400-84326000 Enhancers Primary T cells from cord blood blood
10 chr1:84325400-84326200 Enhancers Primary T helper memory cells from peripheral blood 2 blood
11 chr1:84325400-84326200 Flanking Active TSS Liver Liver
12 chr1:84325400-84326200 Enhancers Fetal Intestine Small intestine
13 chr1:84325600-84326000 Enhancers Primary T helper naive cells from peripheral blood blood
14 chr1:84325600-84326000 Enhancers Primary T helper naive cells fromperipheralblood blood
15 chr1:84325600-84326000 Enhancers Primary T killer naive cells fromperipheralblood blood
16 chr1:84325600-84326000 Enhancers Brain Hippocampus Middle brain
17 chr1:84325600-84326000 Enhancers Brain Substantia Nigra brain
18 chr1:84325600-84326400 Flanking Active TSS Primary T helper cells PMA-I stimulated --
19 chr1:84325800-84326000 Flanking Active TSS Breast Myoepithelial Primary Cells Breast
20 chr1:84325800-84326000 Enhancers Primary hematopoietic stem cells blood
21 chr1:84325800-84326000 Enhancers Primary T helper cells fromperipheralblood blood
22 chr1:84325800-84326000 Weak transcription Primary T killer memory cells from peripheral blood blood
23 chr1:84325800-84326000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
24 chr1:84325800-84326000 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
25 chr1:84325800-84326000 Flanking Active TSS Brain Anterior Caudate brain
26 chr1:84325800-84326000 Enhancers Brain Dorsolateral Prefrontal Cortex brain
27 chr1:84325800-84326000 Enhancers Duodenum Mucosa Duodenum
28 chr1:84325800-84326000 Active TSS HMEC breast
29 chr1:84325800-84326200 Enhancers iPS-15b Cell Line embryonic stem cell
30 chr1:84325800-84326200 Active TSS Foreskin Melanocyte Primary Cells skin03 Skin
31 chr1:84325800-84326200 Flanking Active TSS Fetal Thymus thymus
32 chr1:84325800-84326200 Enhancers Rectal Mucosa Donor 31 rectum
33 chr1:84325800-84326400 Active TSS GM12878-XiMat blood
34 chr1:84325800-84326800 Active TSS Brain Cingulate Gyrus brain
35 chr1:84325800-84327000 Active TSS Foreskin Melanocyte Primary Cells skin01 Skin
36 chr1:84325800-84327000 Active TSS Brain Inferior Temporal Lobe brain
37 chr1:84325800-84327200 Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
38 chr1:84325800-84327200 Flanking Active TSS NHEK skin

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Last update: Aug 31, 2015