The 2.0 version of rSNPBase

Variant report

Variant rs1408474
Chromosome Location chr1:84377080-84377081
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:44 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:84333400-84382400 Weak transcription Skeletal Muscle Female skeletal muscle
2 chr1:84341200-84380400 Weak transcription Duodenum Smooth Muscle Duodenum
3 chr1:84345600-84384400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
4 chr1:84346800-84382400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
5 chr1:84349800-84380400 Weak transcription Cortex derived primary cultured neurospheres brain
6 chr1:84351000-84391400 Weak transcription Fetal Stomach stomach
7 chr1:84352800-84382400 Weak transcription Brain Anterior Caudate brain
8 chr1:84354000-84380600 Weak transcription Fetal Muscle Leg muscle
9 chr1:84355800-84382200 Weak transcription Fetal Muscle Trunk muscle
10 chr1:84355800-84382600 Weak transcription Adipose Nuclei Adipose
11 chr1:84356000-84380400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
12 chr1:84360600-84384600 Weak transcription Aorta Aorta
13 chr1:84362600-84403200 Weak transcription Fetal Brain Male brain
14 chr1:84363600-84378400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
15 chr1:84366200-84384600 Weak transcription Gastric stomach
16 chr1:84366400-84392800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
17 chr1:84366600-84382200 Weak transcription Fetal Brain Female brain
18 chr1:84366800-84399400 Weak transcription Skeletal Muscle Male skeletal muscle
19 chr1:84367800-84385000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
20 chr1:84368000-84390000 Weak transcription NH-A brain
21 chr1:84368000-84394200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
22 chr1:84368200-84384400 Weak transcription HMEC breast
23 chr1:84368200-84393400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
24 chr1:84368200-84393800 Weak transcription Rectal Smooth Muscle rectum
25 chr1:84368200-84394800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
26 chr1:84368400-84416600 Weak transcription NHLF lung
27 chr1:84368400-84428400 Weak transcription Pancreas Pancrea
28 chr1:84368600-84382400 Weak transcription NHDF-Ad bronchial
29 chr1:84372200-84378600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
30 chr1:84373200-84377600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
31 chr1:84373400-84383000 Weak transcription Stomach Smooth Muscle stomach
32 chr1:84374200-84393000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
33 chr1:84375400-84377600 Strong transcription Brain Germinal Matrix brain
34 chr1:84376000-84378800 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
35 chr1:84376200-84377600 Enhancers Brain Substantia Nigra brain
36 chr1:84376200-84378400 Genic enhancers Brain Inferior Temporal Lobe brain
37 chr1:84376200-84392800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
38 chr1:84376400-84380600 Weak transcription HSMMtube muscle
39 chr1:84376400-84382400 Weak transcription HSMM muscle
40 chr1:84376600-84378000 Enhancers Brain Cingulate Gyrus brain
41 chr1:84376800-84380400 Weak transcription Muscle Satellite Cultured Cells --
42 chr1:84376800-84382400 Weak transcription Brain Angular Gyrus brain
43 chr1:84376800-84405000 Weak transcription Left Ventricle heart
44 chr1:84377000-84380200 Weak transcription Brain Hippocampus Middle brain

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Last update: Aug 31, 2015