Variant report

Variant	rs41293003
Chromosome Location	chr1:84352757-84352758
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10489508	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10493742	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10493743	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11163863	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11163864	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12116464	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12116522	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12116857	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12118371	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12118428	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12119338	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12119424	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12119854	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12120380	1.00[ASN][1000 genomes]
rs12120801	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12120905	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12121058	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12121629	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12123323	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12125111	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12125251	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12126397	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12126515	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12127526	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12127657	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12128942	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12129276	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12131968	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12133196	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12133949	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12135679	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12136835	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12138857	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12139383	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12140562	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12140964	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12141004	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12141166	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12142059	1.00[ASN][1000 genomes]
rs12142873	0.85[EUR][1000 genomes]
rs12142944	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12143951	1.00[ASN][1000 genomes]
rs12144066	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12144704	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12145472	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1408474	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1408475	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17130437	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17130475	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17475494	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17534879	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1925712	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2006	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2031371	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2147394	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2181901	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2389650	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41293005	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41423448	1.00[ASN][1000 genomes]
rs41525348	1.00[ASN][1000 genomes]
rs4258240	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4387198	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4437897	1.00[ASN][1000 genomes]
rs45515591	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56159052	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6690381	1.00[ASN][1000 genomes]
rs6700983	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7519127	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9645391	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9645396	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9645397	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84327000-84361800	Weak transcription	Fetal Brain Female	brain
2	chr1:84327000-84375400	Weak transcription	Brain Germinal Matrix	brain
3	chr1:84328200-84354400	Weak transcription	Brain Substantia Nigra	brain
4	chr1:84329000-84373000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr1:84333400-84382400	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr1:84334600-84355400	Weak transcription	HSMMtube	muscle
7	chr1:84338800-84367600	Weak transcription	Pancreas	Pancrea
8	chr1:84341000-84359400	Weak transcription	Psoas Muscle	Psoas
9	chr1:84341200-84380400	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr1:84343600-84361800	Weak transcription	Fetal Brain Male	brain
11	chr1:84345600-84384400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr1:84345800-84353800	Weak transcription	Brain Hippocampus Middle	brain
13	chr1:84346800-84382400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr1:84349200-84355200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr1:84349600-84352800	Weak transcription	Colon Smooth Muscle	Colon
16	chr1:84349800-84355400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr1:84349800-84365000	Weak transcription	Stomach Smooth Muscle	stomach
18	chr1:84349800-84365800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr1:84349800-84380400	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr1:84350000-84366000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr1:84350000-84366000	Weak transcription	NHDF-Ad	bronchial
22	chr1:84350200-84355200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr1:84350200-84363000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr1:84350200-84363000	Weak transcription	NHEK	skin
25	chr1:84351000-84391400	Weak transcription	Fetal Stomach	stomach
26	chr1:84351400-84353400	Strong transcription	Brain Inferior Temporal Lobe	brain
27	chr1:84351800-84352800	Strong transcription	Brain Anterior Caudate	brain
28	chr1:84351800-84355400	Weak transcription	Adipose Nuclei	Adipose
29	chr1:84352000-84353000	Strong transcription	HSMM	muscle
30	chr1:84352000-84355400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr1:84352200-84353400	Strong transcription	Brain Angular Gyrus	brain
32	chr1:84352400-84353200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr1:84352400-84353200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr1:84352400-84354000	Strong transcription	Fetal Muscle Leg	muscle
35	chr1:84352600-84352800	Strong transcription	Aorta	Aorta
36	chr1:84352600-84355800	Strong transcription	Fetal Muscle Trunk	muscle

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