The 2.0 version of rSNPBase

Variant report

Variant rs2389650
Chromosome Location chr1:84368195-84368196
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:46 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:84327000-84375400 Weak transcription Brain Germinal Matrix brain
2 chr1:84329000-84373000 Weak transcription Brain Cingulate Gyrus brain
3 chr1:84333400-84382400 Weak transcription Skeletal Muscle Female skeletal muscle
4 chr1:84341200-84380400 Weak transcription Duodenum Smooth Muscle Duodenum
5 chr1:84345600-84384400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
6 chr1:84346800-84382400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
7 chr1:84349800-84380400 Weak transcription Cortex derived primary cultured neurospheres brain
8 chr1:84351000-84391400 Weak transcription Fetal Stomach stomach
9 chr1:84352800-84382400 Weak transcription Brain Anterior Caudate brain
10 chr1:84353400-84375400 Weak transcription Brain Angular Gyrus brain
11 chr1:84354000-84380600 Weak transcription Fetal Muscle Leg muscle
12 chr1:84355800-84382200 Weak transcription Fetal Muscle Trunk muscle
13 chr1:84355800-84382600 Weak transcription Adipose Nuclei Adipose
14 chr1:84356000-84380400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
15 chr1:84360600-84384600 Weak transcription Aorta Aorta
16 chr1:84362200-84370000 Weak transcription Brain Hippocampus Middle brain
17 chr1:84362600-84403200 Weak transcription Fetal Brain Male brain
18 chr1:84363000-84376200 Weak transcription Brain Substantia Nigra brain
19 chr1:84363600-84378400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
20 chr1:84365400-84368200 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
21 chr1:84365400-84368400 Enhancers NHEK skin
22 chr1:84365600-84368200 Enhancers HMEC breast
23 chr1:84365800-84368200 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
24 chr1:84366000-84368200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
25 chr1:84366000-84368200 Enhancers HSMM muscle
26 chr1:84366000-84368200 Enhancers K562 blood
27 chr1:84366000-84368600 Enhancers Pancreatic Islets Pancreatic Islet
28 chr1:84366000-84368600 Enhancers NHDF-Ad bronchial
29 chr1:84366200-84368200 Enhancers Osteobl bone
30 chr1:84366200-84368400 Enhancers NHLF lung
31 chr1:84366200-84384600 Weak transcription Gastric stomach
32 chr1:84366400-84392800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
33 chr1:84366600-84373000 Weak transcription Brain Inferior Temporal Lobe brain
34 chr1:84366600-84376000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
35 chr1:84366600-84382200 Weak transcription Fetal Brain Female brain
36 chr1:84366800-84399400 Weak transcription Skeletal Muscle Male skeletal muscle
37 chr1:84367600-84368200 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
38 chr1:84367600-84368200 Enhancers Fetal Intestine Small intestine
39 chr1:84367800-84368200 Weak transcription Pancreas Pancrea
40 chr1:84367800-84376000 Weak transcription HSMMtube muscle
41 chr1:84367800-84385000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
42 chr1:84368000-84368200 Enhancers Rectal Smooth Muscle rectum
43 chr1:84368000-84369800 Strong transcription Stomach Smooth Muscle stomach
44 chr1:84368000-84375800 Weak transcription Muscle Satellite Cultured Cells --
45 chr1:84368000-84390000 Weak transcription NH-A brain
46 chr1:84368000-84394200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived

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Last update: Aug 31, 2015