The 2.0 version of rSNPBase

Variant report

Variant rs17534879
Chromosome Location chr1:84400814-84400815
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:33 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:84362600-84403200 Weak transcription Fetal Brain Male brain
2 chr1:84368400-84416600 Weak transcription NHLF lung
3 chr1:84368400-84428400 Weak transcription Pancreas Pancrea
4 chr1:84376800-84405000 Weak transcription Left Ventricle heart
5 chr1:84382600-84409800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
6 chr1:84383200-84408600 Weak transcription Adipose Nuclei Adipose
7 chr1:84384800-84406600 Weak transcription Aorta Aorta
8 chr1:84385200-84408600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
9 chr1:84386600-84401600 Weak transcription Stomach Smooth Muscle stomach
10 chr1:84386800-84403200 Weak transcription NHDF-Ad bronchial
11 chr1:84387000-84408400 Weak transcription Cortex derived primary cultured neurospheres brain
12 chr1:84387000-84408400 Weak transcription Fetal Muscle Leg muscle
13 chr1:84387000-84410000 Weak transcription Brain Germinal Matrix brain
14 chr1:84388800-84402200 Weak transcription HSMM muscle
15 chr1:84390600-84402400 Weak transcription Fetal Brain Female brain
16 chr1:84392200-84422400 Weak transcription Fetal Stomach stomach
17 chr1:84392400-84420400 Weak transcription Fetal Muscle Trunk muscle
18 chr1:84393400-84406000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
19 chr1:84394000-84408600 Weak transcription Duodenum Smooth Muscle Duodenum
20 chr1:84395200-84403400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
21 chr1:84395400-84403200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
22 chr1:84398200-84402800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
23 chr1:84399200-84403000 Weak transcription K562 blood
24 chr1:84399200-84429800 Weak transcription HSMMtube muscle
25 chr1:84399400-84401000 Enhancers Skeletal Muscle Female skeletal muscle
26 chr1:84399800-84402400 Weak transcription Brain Cingulate Gyrus brain
27 chr1:84399800-84403200 Weak transcription Brain Inferior Temporal Lobe brain
28 chr1:84399800-84404000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
29 chr1:84399800-84404800 Weak transcription Skeletal Muscle Male skeletal muscle
30 chr1:84400000-84403600 Weak transcription Brain Hippocampus Middle brain
31 chr1:84400200-84408400 Weak transcription Brain Anterior Caudate brain
32 chr1:84400600-84404200 Weak transcription Brain Angular Gyrus brain
33 chr1:84400800-84402000 Weak transcription Brain Substantia Nigra brain

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Last update: Aug 31, 2015