Variant report

Variant	rs12142873
Chromosome Location	chr1:84456013-84456014
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:84455174..84458302-chr1:84460136..84463238,3	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10493742	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10493743	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11163863	0.89[EUR][1000 genomes]
rs11163864	0.89[EUR][1000 genomes]
rs12116464	0.92[EUR][1000 genomes]
rs12116857	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12118371	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12118428	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12119338	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12119424	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12119854	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12120905	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12121058	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12121629	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12125251	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12126397	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12126515	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12127526	0.81[EUR][1000 genomes]
rs12129276	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12131968	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12133196	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12133949	0.92[EUR][1000 genomes]
rs12135679	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12136835	0.89[EUR][1000 genomes]
rs12138857	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12140562	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12140964	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12141166	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12142944	0.92[EUR][1000 genomes]
rs1408474	0.92[EUR][1000 genomes]
rs1408475	0.92[EUR][1000 genomes]
rs17130437	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17130475	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17475494	0.92[EUR][1000 genomes]
rs17534879	0.92[EUR][1000 genomes]
rs1925712	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2389650	0.92[EUR][1000 genomes]
rs41293003	0.85[EUR][1000 genomes]
rs41293005	0.85[EUR][1000 genomes]
rs4258240	0.92[EUR][1000 genomes]
rs56159052	0.92[EUR][1000 genomes]
rs7519127	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9645391	0.85[EUR][1000 genomes]
rs9645396	0.85[EUR][1000 genomes]
rs9645397	0.85[EUR][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84446200-84461800	Weak transcription	Aorta	Aorta
2	chr1:84451200-84461000	Weak transcription	Gastric	stomach
3	chr1:84451200-84464000	Weak transcription	Pancreas	Pancrea
4	chr1:84451400-84462200	Weak transcription	Stomach Mucosa	stomach
5	chr1:84452600-84459000	Weak transcription	Brain Angular Gyrus	brain
6	chr1:84452600-84460000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:84452600-84462200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr1:84452600-84462200	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr1:84452600-84464000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr1:84453400-84462400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr1:84454000-84464000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr1:84454800-84459000	Weak transcription	Brain Substantia Nigra	brain
13	chr1:84454800-84460000	Weak transcription	HSMM	muscle
14	chr1:84455600-84462200	Weak transcription	Rectal Smooth Muscle	rectum
15	chr1:84455800-84459000	Weak transcription	Brain Hippocampus Middle	brain

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