Variant report

Variant	rs41525348
Chromosome Location	chr1:84269426-84269427
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 91 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs10489508	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10493742	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10493743	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11163863	1.00[ASN][1000 genomes]
rs11163864	1.00[ASN][1000 genomes]
rs12116464	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12116522	1.00[ASN][1000 genomes]
rs12116857	1.00[ASN][1000 genomes]
rs12117386	1.00[ASN][1000 genomes]
rs12117716	1.00[ASN][1000 genomes]
rs12118371	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12118428	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12119338	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12119854	1.00[ASN][1000 genomes]
rs12120380	1.00[ASN][1000 genomes]
rs12120801	1.00[ASN][1000 genomes]
rs12120817	1.00[ASN][1000 genomes]
rs12120905	1.00[ASN][1000 genomes]
rs12120992	1.00[ASN][1000 genomes]
rs12121058	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12121629	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12121952	1.00[ASN][1000 genomes]
rs12123247	1.00[ASN][1000 genomes]
rs12123323	1.00[ASN][1000 genomes]
rs12125111	1.00[ASN][1000 genomes]
rs12125251	1.00[ASN][1000 genomes]
rs12125932	1.00[ASN][1000 genomes]
rs12126397	1.00[ASN][1000 genomes]
rs12126515	1.00[ASN][1000 genomes]
rs12127196	1.00[ASN][1000 genomes]
rs12127526	1.00[ASN][1000 genomes]
rs12127657	1.00[ASN][1000 genomes]
rs12128942	1.00[ASN][1000 genomes]
rs12129276	1.00[ASN][1000 genomes]
rs12131968	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12132861	1.00[ASN][1000 genomes]
rs12133196	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12133949	1.00[ASN][1000 genomes]
rs12135099	1.00[ASN][1000 genomes]
rs12135679	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12135764	1.00[ASN][1000 genomes]
rs12136835	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12138207	1.00[ASN][1000 genomes]
rs12138857	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12139383	1.00[ASN][1000 genomes]
rs12140562	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12140964	1.00[ASN][1000 genomes]
rs12141004	1.00[ASN][1000 genomes]
rs12141166	1.00[ASN][1000 genomes]
rs12142059	1.00[ASN][1000 genomes]
rs12142944	1.00[CHB][hapmap]
rs12143951	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12144066	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12144704	1.00[ASN][1000 genomes]
rs12145472	1.00[ASN][1000 genomes]
rs12145760	1.00[ASN][1000 genomes]
rs1408474	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1408475	1.00[ASN][1000 genomes]
rs17130437	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17130475	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17475494	1.00[ASN][1000 genomes]
rs17534879	1.00[ASN][1000 genomes]
rs1925712	1.00[ASN][1000 genomes]
rs2006	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2031371	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2147394	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2181901	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2389650	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs41293003	1.00[ASN][1000 genomes]
rs41293005	1.00[ASN][1000 genomes]
rs41423448	1.00[ASN][1000 genomes]
rs4258240	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4282844	1.00[ASN][1000 genomes]
rs4387198	1.00[ASN][1000 genomes]
rs4437897	1.00[ASN][1000 genomes]
rs45515591	1.00[ASN][1000 genomes]
rs56159052	1.00[ASN][1000 genomes]
rs58842909	1.00[ASN][1000 genomes]
rs61483809	1.00[ASN][1000 genomes]
rs6576912	1.00[ASN][1000 genomes]
rs6576913	1.00[ASN][1000 genomes]
rs6576916	1.00[ASN][1000 genomes]
rs6678773	1.00[ASN][1000 genomes]
rs6690381	1.00[ASN][1000 genomes]
rs6700983	1.00[ASN][1000 genomes]
rs74096420	1.00[ASN][1000 genomes]
rs74096423	1.00[ASN][1000 genomes]
rs7519127	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9645391	1.00[ASN][1000 genomes]
rs9645396	1.00[ASN][1000 genomes]
rs9645397	1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs41525348	C1orf52	cis	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84265800-84270400	Weak transcription	Pancreas	Pancrea
2	chr1:84268400-84270400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr1:84268800-84270200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:84268800-84270200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr1:84268800-84270400	Weak transcription	Aorta	Aorta
6	chr1:84268800-84273400	Weak transcription	Adipose Nuclei	Adipose
7	chr1:84268800-84273600	Weak transcription	Liver	Liver
8	chr1:84269400-84270200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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