The 2.0 version of rSNPBase

Variant report

Variant rs12138207
Chromosome Location chr1:84107328-84107329
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:50 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:84104400-84107800 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
2 chr1:84104600-84107600 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
3 chr1:84105400-84112400 Weak transcription iPS-15b Cell Line embryonic stem cell
4 chr1:84105800-84108000 Enhancers Fetal Heart heart
5 chr1:84106400-84107800 Enhancers Fetal Kidney kidney
6 chr1:84106600-84107400 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
7 chr1:84106600-84107400 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
8 chr1:84106600-84107400 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
9 chr1:84106600-84107400 Enhancers HUES64 Cell Line embryonic stem cell
10 chr1:84106800-84107400 Enhancers iPS-18 Cell Line embryonic stem cell
11 chr1:84106800-84107400 Enhancers Brain Germinal Matrix brain
12 chr1:84106800-84107600 Active TSS Rectal Smooth Muscle rectum
13 chr1:84106800-84108600 Enhancers Fetal Muscle Leg muscle
14 chr1:84106800-84108600 Enhancers Fetal Stomach stomach
15 chr1:84106800-84108600 Enhancers Fetal Thymus thymus
16 chr1:84107000-84107400 Enhancers ES-I3 Cell Line embryonic stem cell
17 chr1:84107000-84107400 Enhancers HUES48 Cell Line embryonic stem cell
18 chr1:84107000-84107400 Enhancers HUES6 Cell Line embryonic stem cell
19 chr1:84107000-84107400 Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
20 chr1:84107000-84107400 Flanking Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
21 chr1:84107000-84107400 Active TSS Breast Myoepithelial Primary Cells Breast
22 chr1:84107000-84107400 Enhancers Primary T cells from cord blood blood
23 chr1:84107000-84107400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
24 chr1:84107000-84107400 Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
25 chr1:84107000-84107400 Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin
26 chr1:84107000-84107400 Enhancers Liver Liver
27 chr1:84107000-84107400 Active TSS Brain Hippocampus Middle brain
28 chr1:84107000-84107400 Active TSS Ovary ovary
29 chr1:84107000-84107400 Enhancers Rectal Mucosa Donor 29 rectum
30 chr1:84107000-84107400 Flanking Active TSS Stomach Smooth Muscle stomach
31 chr1:84107000-84107400 Flanking Active TSS Dnd41 blood
32 chr1:84107000-84107400 Active TSS NHDF-Ad bronchial
33 chr1:84107000-84107400 Flanking Active TSS NHLF lung
34 chr1:84107000-84107400 Active TSS Osteobl bone
35 chr1:84107000-84107600 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
36 chr1:84107000-84107600 Enhancers Cortex derived primary cultured neurospheres brain
37 chr1:84107000-84107600 Flanking Active TSS Colon Smooth Muscle Colon
38 chr1:84107000-84107600 Flanking Active TSS Duodenum Smooth Muscle Duodenum
39 chr1:84107000-84107800 Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
40 chr1:84107000-84107800 Flanking Active TSS Adipose Nuclei Adipose
41 chr1:84107000-84107800 Flanking Active TSS Fetal Lung lung
42 chr1:84107000-84107800 Enhancers Skeletal Muscle Female skeletal muscle
43 chr1:84107000-84108200 Enhancers Small Intestine intestine
44 chr1:84107000-84108600 Enhancers Lung lung
45 chr1:84107200-84107400 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
46 chr1:84107200-84107400 Flanking Active TSS Muscle Satellite Cultured Cells --
47 chr1:84107200-84107400 Active TSS Foreskin Fibroblast Primary Cells skin02 Skin
48 chr1:84107200-84107600 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
49 chr1:84107200-84107800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
50 chr1:84107200-84107800 Enhancers Brain Anterior Caudate brain

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Last update: Aug 31, 2015