Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CBX3	chr5:43416211-43416788	K562	blood:	n/a	n/a
2	JUN	chr5:43415728-43417127	K562	blood:	n/a	chr5:43416868-43416882
3	HDAC2	chr5:43416241-43416667	K562	blood:	n/a	n/a
4	TEAD4	chr5:43416109-43416795	K562	blood:	n/a	n/a
5	GATA1	chr5:43415699-43416999	K562	blood:	n/a	chr5:43416576-43416583 chr5:43416569-43416590 chr5:43416576-43416583 chr5:43416571-43416587 chr5:43416576-43416583 chr5:43416565-43416582
6	ARID3A	chr5:43416218-43416754	K562	blood:	n/a	n/a
7	CUX1	chr5:43415954-43416700	K562	blood:	n/a	n/a
8	TCF7L2	chr5:43415868-43416594	Hela-S3	cervix:	n/a	n/a
9	CEBPD	chr5:43416148-43416855	K562	blood:	n/a	n/a
10	TAL1	chr5:43416223-43416819	K562	blood:	n/a	chr5:43416576-43416584 chr5:43416565-43416583
11	PML	chr5:43416256-43416825	K562	blood:	n/a	n/a
12	NR2F2	chr5:43416160-43416862	K562	blood:	n/a	n/a
13	RCOR1	chr5:43416227-43416752	K562	blood:	n/a	n/a
14	TRIM28	chr5:43416211-43416888	K562	blood:	n/a	n/a
15	TEAD4	chr5:43416159-43416823	K562	blood:	n/a	n/a
16	IRF1	chr5:43416105-43416649	K562	blood:	n/a	n/a
17	TBL1XR1	chr5:43416206-43416769	K562	blood:	n/a	n/a
18	JUND	chr5:43415930-43416822	K562	blood:	n/a	chr5:43416600-43416611

No.	Distal block	Cell Line	Cell type
1	chr5:43414938..43417802-chr5:43484116..43485960,3	K562	blood:
2	chr5:43414418..43419410-chr5:43420621..43423728,9	MCF-7	breast:
3	chr5:43415058..43417712-chr5:43429941..43433858,3	MCF-7	breast:
4	chr5:43415947..43418426-chr5:43483212..43485985,2	MCF-7	breast:
5	chr5:43124778..43127199-chr5:43415095..43418069,2	K562	blood:
6	chr5:43416042..43417802-chr5:43484116..43485960,3	K562	blood:
7	chr5:43414209..43417437-chr5:43419319..43422239,3	K562	blood:
8	chr5:43411569..43413529-chr5:43414948..43417316,2	MCF-7	breast:

rs_ID	r²[population]
rs10036954	0.82[CHB][hapmap]
rs10068064	0.82[CHB][hapmap]
rs10074682	0.82[ASN][1000 genomes]
rs10462051	0.82[CHB][hapmap]
rs11949083	0.82[CHB][hapmap]
rs12187908	0.95[CEU][hapmap];0.85[CHD][hapmap];0.92[JPT][hapmap]
rs12521249	0.82[CHB][hapmap]
rs1593971	0.82[CHB][hapmap];0.84[JPT][hapmap];0.80[ASN][1000 genomes]
rs2131998	0.82[CHB][hapmap]
rs3776423	0.82[CHB][hapmap]
rs4072918	0.82[CHB][hapmap]
rs4072919	0.82[CHB][hapmap]
rs4074777	0.82[CHB][hapmap]
rs4535459	0.82[CHB][hapmap]
rs4866831	0.82[ASN][1000 genomes]
rs4866833	0.82[CHB][hapmap]
rs6451695	0.82[CHB][hapmap]
rs6451697	0.82[JPT][hapmap]
rs6451699	0.82[CHB][hapmap]
rs6451705	0.82[CHB][hapmap]
rs6866325	0.82[CHB][hapmap]
rs6870018	0.82[CHB][hapmap]
rs6878770	0.82[CHB][hapmap]
rs6884661	0.82[CHB][hapmap]
rs6885679	0.82[CHB][hapmap]
rs6895327	0.82[CHB][hapmap]
rs6896693	0.82[CHB][hapmap]
rs73100614	0.80[ASN][1000 genomes]
rs750583	0.82[CHB][hapmap];0.82[ASN][1000 genomes]
rs7710628	0.82[CHB][hapmap]
rs7713479	0.82[CHB][hapmap]
rs7715782	0.82[CHB][hapmap]
rs7718627	0.82[CHB][hapmap]
rs7736108	0.82[CHB][hapmap]

SNP	Gene	Cis/trans	Tissue	Source
rs754301	NNT	cis	lymphoblastoid	seeQTL
rs754301	C5orf34	cis	parietal	SCAN
rs754301	NNT	cis	cerebellum	SCAN
rs754301	NNT	cis	multi-tissue	Pritchard

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43402200-43420200	Weak transcription	Gastric	stomach
2	chr5:43411200-43418200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr5:43412600-43420400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr5:43412600-43421600	Weak transcription	Pancreas	Pancrea
5	chr5:43413400-43416800	Weak transcription	Duodenum Mucosa	Duodenum
6	chr5:43413800-43416800	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr5:43414600-43416400	Weak transcription	Stomach Mucosa	stomach
8	chr5:43415800-43416600	Flanking Active TSS	K562	blood
9	chr5:43415800-43417000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr5:43415800-43417200	Enhancers	Hela-S3	cervix
11	chr5:43415800-43417400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr5:43416200-43417200	Enhancers	Fetal Intestine Small	intestine

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