Variant report

Variant rs6878770
Chromosome Location chr5:43461795-43461796
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:83 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:43433800-43483400 Weak transcription Gastric stomach
2 chr5:43440000-43462400 Weak transcription Colonic Mucosa Colon
3 chr5:43440800-43466400 Weak transcription Colon Smooth Muscle Colon
4 chr5:43440800-43466800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
5 chr5:43441600-43466600 Weak transcription Primary T helper naive cells fromperipheralblood blood
6 chr5:43444000-43463600 Weak transcription Stomach Smooth Muscle stomach
7 chr5:43444000-43464400 Weak transcription Rectal Mucosa Donor 31 rectum
8 chr5:43444000-43467000 Weak transcription Primary T regulatory cells fromperipheralblood blood
9 chr5:43444000-43467000 Weak transcription Left Ventricle heart
10 chr5:43444000-43482600 Weak transcription HMEC breast
11 chr5:43444200-43467000 Weak transcription Sigmoid Colon Sigmoid Colon
12 chr5:43444200-43472600 Weak transcription Primary T killer memory cells from peripheral blood blood
13 chr5:43444400-43463800 Weak transcription Small Intestine intestine
14 chr5:43444600-43463600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
15 chr5:43444600-43466800 Weak transcription Brain Angular Gyrus brain
16 chr5:43444800-43466600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
17 chr5:43444800-43482600 Weak transcription Rectal Smooth Muscle rectum
18 chr5:43445200-43466800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
19 chr5:43446600-43461800 Weak transcription Right Ventricle heart
20 chr5:43448200-43467400 Weak transcription Primary T helper cells fromperipheralblood blood
21 chr5:43448200-43471800 Weak transcription Primary T killer naive cells fromperipheralblood blood
22 chr5:43448400-43466200 Weak transcription Primary T cells fromperipheralblood blood
23 chr5:43448800-43463000 Weak transcription Brain Cingulate Gyrus brain
24 chr5:43453400-43466200 Weak transcription Liver Liver
25 chr5:43453800-43466200 Weak transcription Primary T helper cells PMA-I stimulated --
26 chr5:43453800-43482600 Weak transcription Rectal Mucosa Donor 29 rectum
27 chr5:43454000-43482400 Weak transcription Osteobl bone
28 chr5:43454800-43466200 Weak transcription Adipose Nuclei Adipose
29 chr5:43454800-43482800 Weak transcription Skeletal Muscle Female skeletal muscle
30 chr5:43456000-43462800 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
31 chr5:43456000-43462800 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
32 chr5:43457200-43466200 Weak transcription A549 lung
33 chr5:43457600-43463600 Weak transcription Esophagus oesophagus
34 chr5:43459200-43462200 ZNF genes & repeats Dnd41 blood
35 chr5:43459600-43466200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
36 chr5:43459800-43462200 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
37 chr5:43459800-43462600 Weak transcription Placenta Amnion Placenta Amnion
38 chr5:43460000-43462200 ZNF genes & repeats Foreskin Melanocyte Primary Cells skin01 Skin
39 chr5:43460000-43462200 ZNF genes & repeats Fetal Intestine Small intestine
40 chr5:43460000-43462400 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
41 chr5:43460200-43462200 ZNF genes & repeats H1 Derived Mesenchymal Stem Cells ES cell derived
42 chr5:43460200-43462200 Strong transcription Muscle Satellite Cultured Cells --
43 chr5:43460200-43462400 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
44 chr5:43460200-43462400 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
45 chr5:43460200-43462400 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
46 chr5:43460400-43462600 Strong transcription Hela-S3 cervix
47 chr5:43460400-43466200 Weak transcription Duodenum Smooth Muscle Duodenum
48 chr5:43460400-43466400 Weak transcription Primary B cells from peripheral blood blood
49 chr5:43460400-43467000 Weak transcription Ovary ovary
50 chr5:43460400-43467400 Weak transcription HUVEC blood vessel

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