The 2.0 version of rSNPBase

Variant report

Variant rs57403343
Chromosome Location chr5:43502947-43502948
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:98 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:43484800-43505600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
2 chr5:43484800-43511000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
3 chr5:43484800-43514000 Weak transcription ES-WA7 Cell Line embryonic stem cell
4 chr5:43484800-43514600 Weak transcription Ovary ovary
5 chr5:43484800-43514800 Weak transcription Spleen Spleen
6 chr5:43485000-43503000 Weak transcription NHEK skin
7 chr5:43485000-43503400 Weak transcription Brain Germinal Matrix brain
8 chr5:43485000-43504600 Weak transcription Fetal Muscle Leg muscle
9 chr5:43485000-43505000 Weak transcription ES-I3 Cell Line embryonic stem cell
10 chr5:43485000-43513400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
11 chr5:43485000-43513800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
12 chr5:43485000-43514200 Weak transcription Sigmoid Colon Sigmoid Colon
13 chr5:43485200-43505400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
14 chr5:43485200-43505400 Weak transcription Fetal Intestine Large intestine
15 chr5:43485200-43505400 Weak transcription Fetal Stomach stomach
16 chr5:43485200-43506000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
17 chr5:43485200-43506000 Weak transcription Adipose Nuclei Adipose
18 chr5:43485200-43513200 Weak transcription NHDF-Ad bronchial
19 chr5:43485200-43513200 Weak transcription NHLF lung
20 chr5:43485200-43513400 Weak transcription iPS-15b Cell Line embryonic stem cell
21 chr5:43485200-43513400 Weak transcription Fetal Lung lung
22 chr5:43485200-43513600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
23 chr5:43485200-43513600 Weak transcription Fetal Intestine Small intestine
24 chr5:43485200-43513600 Weak transcription HSMM muscle
25 chr5:43485200-43513600 Weak transcription NH-A brain
26 chr5:43485200-43514200 Weak transcription Duodenum Smooth Muscle Duodenum
27 chr5:43485400-43505400 Weak transcription Cortex derived primary cultured neurospheres brain
28 chr5:43485400-43514200 Weak transcription Skeletal Muscle Male skeletal muscle
29 chr5:43485800-43503000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
30 chr5:43485800-43505200 Weak transcription Primary B cells from peripheral blood blood
31 chr5:43485800-43505600 Weak transcription Primary neutrophils fromperipheralblood blood
32 chr5:43485800-43514200 Weak transcription Skeletal Muscle Female skeletal muscle
33 chr5:43486000-43503000 Weak transcription Thymus Thymus
34 chr5:43486000-43509800 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
35 chr5:43486000-43514200 Weak transcription Primary T regulatory cells fromperipheralblood blood
36 chr5:43486400-43513400 Weak transcription Primary T killer memory cells from peripheral blood blood
37 chr5:43486400-43513600 Weak transcription Primary T helper cells fromperipheralblood blood
38 chr5:43486800-43512200 Weak transcription HepG2 liver
39 chr5:43486800-43513400 Weak transcription Primary T helper cells PMA-I stimulated --
40 chr5:43487400-43510800 Weak transcription Fetal Adrenal Gland Adrenal Gland
41 chr5:43487600-43513600 Weak transcription Primary T helper naive cells fromperipheralblood blood
42 chr5:43489000-43504600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
43 chr5:43489800-43503000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
44 chr5:43489800-43505200 Weak transcription Breast Myoepithelial Primary Cells Breast
45 chr5:43490000-43505200 Weak transcription GM12878-XiMat blood
46 chr5:43490400-43513600 Weak transcription Primary B cells from cord blood blood
47 chr5:43491800-43503400 Weak transcription iPS-18 Cell Line embryonic stem cell
48 chr5:43492000-43514600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
49 chr5:43493000-43506000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
50 chr5:43495000-43513000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin

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Last update: Aug 31, 2015