Variant report

Variant	rs9687341
Chromosome Location	chr11:86590393-86590394
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 109 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:104)

rs_ID	r²[population]
rs10036954	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10038608	0.81[EUR][1000 genomes]
rs10042992	0.83[EUR][1000 genomes]
rs10045455	0.82[EUR][1000 genomes]
rs10053229	0.87[ASN][1000 genomes]
rs10058558	0.85[EUR][1000 genomes]
rs10059912	0.94[ASN][1000 genomes]
rs10061165	0.83[EUR][1000 genomes]
rs10066408	0.87[ASN][1000 genomes]
rs10068064	0.87[ASN][1000 genomes]
rs10074682	0.82[EUR][1000 genomes]
rs10462051	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10473311	0.84[EUR][1000 genomes]
rs10941640	0.86[EUR][1000 genomes]
rs11949083	0.81[ASN][1000 genomes]
rs11958046	0.81[ASN][1000 genomes]
rs12332560	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12521249	0.90[ASN][1000 genomes]
rs12651879	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12659369	0.81[EUR][1000 genomes]
rs12697457	0.90[ASN][1000 genomes]
rs13185343	0.82[EUR][1000 genomes]
rs13189004	0.82[EUR][1000 genomes]
rs13189484	0.85[ASN][1000 genomes]
rs13359906	0.90[ASN][1000 genomes]
rs1389868	0.80[EUR][1000 genomes]
rs1389869	0.80[EUR][1000 genomes]
rs2132000	0.86[EUR][1000 genomes]
rs2172763	0.81[EUR][1000 genomes]
rs28437972	0.94[ASN][1000 genomes]
rs34007811	0.83[EUR][1000 genomes]
rs35710460	0.83[EUR][1000 genomes]
rs35881272	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs36013953	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3776423	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4072918	0.94[ASN][1000 genomes]
rs4072919	0.94[ASN][1000 genomes]
rs4073848	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4073850	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4073851	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4074777	0.87[ASN][1000 genomes]
rs4308491	0.81[EUR][1000 genomes]
rs4331909	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4367306	0.85[EUR][1000 genomes]
rs4386738	0.90[ASN][1000 genomes]
rs4415083	0.82[EUR][1000 genomes]
rs4428418	0.85[ASN][1000 genomes]
rs4467713	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4513704	0.85[EUR][1000 genomes]
rs4535459	0.90[ASN][1000 genomes]
rs4576155	0.82[EUR][1000 genomes]
rs4866746	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4866833	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4866835	0.94[ASN][1000 genomes]
rs55641556	0.84[EUR][1000 genomes]
rs55667604	0.90[ASN][1000 genomes]
rs55855322	0.94[ASN][1000 genomes]
rs56008952	0.92[ASN][1000 genomes]
rs56097465	0.85[ASN][1000 genomes]
rs56333629	0.83[ASN][1000 genomes]
rs56400900	0.84[EUR][1000 genomes]
rs57403343	0.87[ASN][1000 genomes]
rs57547662	0.84[EUR][1000 genomes]
rs57597020	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs59001943	0.94[ASN][1000 genomes]
rs59224335	0.85[ASN][1000 genomes]
rs60297702	0.94[ASN][1000 genomes]
rs6451693	0.82[EUR][1000 genomes]
rs6451695	0.84[EUR][1000 genomes]
rs6451696	0.84[EUR][1000 genomes]
rs6451698	0.84[EUR][1000 genomes]
rs6451703	0.82[EUR][1000 genomes]
rs6451704	0.85[EUR][1000 genomes]
rs6451706	0.82[EUR][1000 genomes]
rs6451712	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67466542	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67581152	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6861704	0.81[EUR][1000 genomes]
rs6862102	0.84[EUR][1000 genomes]
rs6865217	0.81[EUR][1000 genomes]
rs6866325	0.94[ASN][1000 genomes]
rs6866802	0.94[ASN][1000 genomes]
rs6869933	0.94[ASN][1000 genomes]
rs6870018	0.85[EUR][1000 genomes]
rs6870783	0.82[EUR][1000 genomes]
rs6884661	0.94[ASN][1000 genomes]
rs6885679	0.87[ASN][1000 genomes]
rs6891363	0.94[ASN][1000 genomes]
rs6895327	0.87[ASN][1000 genomes]
rs6898866	0.81[ASN][1000 genomes]
rs72756535	0.87[ASN][1000 genomes]
rs73100614	0.82[EUR][1000 genomes]
rs7705166	0.81[ASN][1000 genomes]
rs7706431	0.81[ASN][1000 genomes]
rs7710628	0.87[ASN][1000 genomes]
rs7713479	0.85[ASN][1000 genomes]
rs7715782	0.89[ASN][1000 genomes]
rs7717636	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7734393	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7735243	0.82[EUR][1000 genomes]
rs7736615	0.89[ASN][1000 genomes]
rs9292883	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9885189	0.90[ASN][1000 genomes]
rs9885467	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	esv2756074	chr11:86456552-86729552	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv1037042	chr11:86586876-86978492	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv541119	chr11:86586876-86978492	Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86563200-86598800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:86576800-86599800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:86578200-86593400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:86578200-86627400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr11:86582800-86601600	Weak transcription	Left Ventricle	heart
6	chr11:86583200-86599200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr11:86583200-86599200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr11:86584600-86597000	Weak transcription	Ovary	ovary
9	chr11:86588400-86596400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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