The 2.0 version of rSNPBase

Variant report

Variant rs67466542
Chromosome Location chr5:43485663-43485664
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:92 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:43484800-43485800 Enhancers Primary monocytes fromperipheralblood blood
2 chr5:43484800-43485800 Enhancers Primary B cells from peripheral blood blood
3 chr5:43484800-43486000 Enhancers Primary T helper 17 cells PMA-I stimulated --
4 chr5:43484800-43486200 Enhancers Stomach Mucosa stomach
5 chr5:43484800-43486600 Enhancers Primary T cells fromperipheralblood blood
6 chr5:43484800-43486800 Enhancers Fetal Adrenal Gland Adrenal Gland
7 chr5:43484800-43487600 Enhancers Primary T helper naive cells fromperipheralblood blood
8 chr5:43484800-43498000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
9 chr5:43484800-43502800 Weak transcription H1 Cell Line embryonic stem cell
10 chr5:43484800-43502800 Weak transcription H9 Cell Line embryonic stem cell
11 chr5:43484800-43502800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
12 chr5:43484800-43502800 Weak transcription Fetal Muscle Trunk muscle
13 chr5:43484800-43505600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
14 chr5:43484800-43511000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
15 chr5:43484800-43514000 Weak transcription ES-WA7 Cell Line embryonic stem cell
16 chr5:43484800-43514600 Weak transcription Ovary ovary
17 chr5:43484800-43514800 Weak transcription Spleen Spleen
18 chr5:43485000-43485800 Enhancers Primary neutrophils fromperipheralblood blood
19 chr5:43485000-43485800 Enhancers Primary hematopoietic stem cells short term culture blood
20 chr5:43485000-43485800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
21 chr5:43485000-43485800 Enhancers Brain Dorsolateral Prefrontal Cortex brain
22 chr5:43485000-43485800 Enhancers Monocytes-CD14+_RO01746 blood
23 chr5:43485000-43486000 Enhancers Rectal Mucosa Donor 29 rectum
24 chr5:43485000-43486000 Enhancers Thymus Thymus
25 chr5:43485000-43486400 Enhancers Primary T helper naive cells from peripheral blood blood
26 chr5:43485000-43486400 Enhancers Primary T helper cells fromperipheralblood blood
27 chr5:43485000-43486400 Enhancers Primary T killer naive cells fromperipheralblood blood
28 chr5:43485000-43486400 Enhancers Primary T killer memory cells from peripheral blood blood
29 chr5:43485000-43486400 Enhancers Rectal Mucosa Donor 31 rectum
30 chr5:43485000-43486800 Enhancers Primary T helper memory cells from peripheral blood 2 blood
31 chr5:43485000-43486800 Enhancers HepG2 liver
32 chr5:43485000-43487400 Enhancers Primary T cells from cord blood blood
33 chr5:43485000-43488200 Weak transcription HUES48 Cell Line embryonic stem cell
34 chr5:43485000-43488200 Weak transcription Breast Myoepithelial Primary Cells Breast
35 chr5:43485000-43488400 Weak transcription HUES6 Cell Line embryonic stem cell
36 chr5:43485000-43497800 Weak transcription Placenta Placenta
37 chr5:43485000-43501000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
38 chr5:43485000-43501000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
39 chr5:43485000-43502600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
40 chr5:43485000-43503000 Weak transcription NHEK skin
41 chr5:43485000-43503400 Weak transcription Brain Germinal Matrix brain
42 chr5:43485000-43504600 Weak transcription Fetal Muscle Leg muscle
43 chr5:43485000-43505000 Weak transcription ES-I3 Cell Line embryonic stem cell
44 chr5:43485000-43513400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
45 chr5:43485000-43513800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
46 chr5:43485000-43514200 Weak transcription Sigmoid Colon Sigmoid Colon
47 chr5:43485200-43485800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
48 chr5:43485200-43485800 Enhancers Brain Hippocampus Middle brain
49 chr5:43485200-43485800 Enhancers Brain Inferior Temporal Lobe brain
50 chr5:43485200-43485800 Enhancers Fetal Thymus thymus

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Last update: Aug 31, 2015