Variant report

Variant	rs6859344
Chromosome Location	chr5:43463629-43463630
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10036954	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10038608	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10045400	0.81[EUR][1000 genomes]
rs10045455	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10061165	0.86[EUR][1000 genomes]
rs10074682	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10447144	0.85[EUR][1000 genomes]
rs10473311	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12659369	0.86[EUR][1000 genomes]
rs13185343	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1389868	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1389869	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1428640	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2013173	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2132000	0.87[EUR][1000 genomes]
rs2172763	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34007811	0.82[EUR][1000 genomes]
rs35710460	0.80[EUR][1000 genomes]
rs3776423	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3806870	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4242099	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4308491	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4331909	0.81[EUR][1000 genomes]
rs4415083	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4541663	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4576155	0.81[EUR][1000 genomes]
rs4866746	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs57547662	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs57597020	0.81[EUR][1000 genomes]
rs6451692	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6451693	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6451695	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6451696	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6451698	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6451703	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6451704	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6451706	0.85[EUR][1000 genomes]
rs67466542	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6858942	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6861704	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6862102	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6865217	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6870018	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6870783	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6883661	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73100614	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs750582	0.81[AMR][1000 genomes]
rs750584	0.82[AMR][1000 genomes]
rs7707976	0.82[AMR][1000 genomes]
rs7708369	0.82[AMR][1000 genomes]
rs7708443	0.82[AMR][1000 genomes]
rs7724571	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7731091	0.83[EUR][1000 genomes]
rs7735243	0.85[EUR][1000 genomes]
rs9686159	0.83[EUR][1000 genomes]
rs9885467	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881017	chr5:43444826-43731692	Weak transcription Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	222 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43433800-43483400	Weak transcription	Gastric	stomach
2	chr5:43440800-43466400	Weak transcription	Colon Smooth Muscle	Colon
3	chr5:43440800-43466800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr5:43441600-43466600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr5:43444000-43464400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr5:43444000-43467000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr5:43444000-43467000	Weak transcription	Left Ventricle	heart
8	chr5:43444000-43482600	Weak transcription	HMEC	breast
9	chr5:43444200-43467000	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr5:43444200-43472600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr5:43444400-43463800	Weak transcription	Small Intestine	intestine
12	chr5:43444600-43466800	Weak transcription	Brain Angular Gyrus	brain
13	chr5:43444800-43466600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr5:43444800-43482600	Weak transcription	Rectal Smooth Muscle	rectum
15	chr5:43445200-43466800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr5:43448200-43467400	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr5:43448200-43471800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr5:43448400-43466200	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr5:43453400-43466200	Weak transcription	Liver	Liver
20	chr5:43453800-43466200	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr5:43453800-43482600	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr5:43454000-43482400	Weak transcription	Osteobl	bone
23	chr5:43454800-43466200	Weak transcription	Adipose Nuclei	Adipose
24	chr5:43454800-43482800	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr5:43457200-43466200	Weak transcription	A549	lung
26	chr5:43459600-43466200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr5:43460400-43466200	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr5:43460400-43466400	Weak transcription	Primary B cells from peripheral blood	blood
29	chr5:43460400-43467000	Weak transcription	Ovary	ovary
30	chr5:43460400-43467400	Weak transcription	HUVEC	blood vessel
31	chr5:43460400-43472600	Weak transcription	Fetal Kidney	kidney
32	chr5:43460600-43466200	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr5:43460600-43471600	Weak transcription	NHDF-Ad	bronchial
34	chr5:43460600-43472000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr5:43461000-43470000	Weak transcription	HSMMtube	muscle
36	chr5:43461000-43482400	Weak transcription	NHLF	lung
37	chr5:43461200-43465000	Weak transcription	K562	blood
38	chr5:43461200-43466200	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr5:43461200-43466200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr5:43461200-43466200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr5:43461200-43466600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr5:43461200-43467000	Weak transcription	Aorta	Aorta
43	chr5:43461200-43468000	Weak transcription	Thymus	Thymus
44	chr5:43461200-43482800	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr5:43461200-43483400	Weak transcription	Pancreas	Pancrea
46	chr5:43461400-43466200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr5:43461600-43469800	Weak transcription	HSMM	muscle
48	chr5:43462200-43466200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr5:43462200-43466200	Weak transcription	Dnd41	blood
50	chr5:43462200-43466800	Weak transcription	Duodenum Mucosa	Duodenum

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