Variant report

Variant	rs6451692
Chromosome Location	chr5:43433735-43433736
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:43421198..43423838-chr5:43433065..43436250,3	MCF-7	breast:
2	chr5:43431210..43434471-chr5:43482730..43486834,6	MCF-7	breast:
3	chr5:43312546..43314992-chr5:43430991..43434496,4	MCF-7	breast:
4	chr5:43431725..43434320-chr5:43436226..43437819,2	MCF-7	breast:
5	chr5:43424455..43437851-chr5:43481449..43486495,21	MCF-7	breast:
6	chr5:43431753..43434368-chr5:43450834..43452573,2	MCF-7	breast:
7	chr5:43431403..43434085-chr5:43437708..43439507,2	K562	blood:
8	chr5:43415058..43417712-chr5:43429941..43433858,3	MCF-7	breast:
9	chr5:43421017..43424119-chr5:43432639..43434257,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000249492	Chromatin interaction
ENSG00000112972	Chromatin interaction
ENSG00000151881	Chromatin interaction

Extended variants
information (count: 84 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10036954	0.92[CEU][hapmap];0.95[GIH][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10038608	1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10042992	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs10045400	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10045455	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10057103	0.89[CEU][hapmap];0.87[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap]
rs10058558	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs10061165	1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10065863	0.89[CEU][hapmap];0.87[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap]
rs10074682	1.00[ASW][hapmap];0.96[CEU][hapmap];0.95[GIH][hapmap];0.83[LWK][hapmap];0.98[TSI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10447144	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10462051	0.96[CEU][hapmap]
rs10473311	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1072745	0.89[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap]
rs1072746	0.89[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap]
rs10941640	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs12652547	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs12659369	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12697452	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13185343	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13189004	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap]
rs1389868	0.96[CEU][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1389869	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1428640	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2013173	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2131999	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2132000	0.90[EUR][1000 genomes]
rs2172763	1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34007811	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35710460	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35881272	0.86[EUR][1000 genomes]
rs36013953	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3776423	1.00[ASW][hapmap];0.96[CEU][hapmap];0.95[GIH][hapmap];0.83[LWK][hapmap];0.98[TSI][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3806870	1.00[CEU][hapmap];0.90[TSI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4073848	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4073850	0.87[EUR][1000 genomes]
rs4073851	0.82[EUR][1000 genomes]
rs4242099	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4308491	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4331909	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4367306	1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs4415083	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4467713	0.96[CEU][hapmap];0.95[GIH][hapmap];0.98[TSI][hapmap];0.81[EUR][1000 genomes]
rs4513704	0.82[EUR][1000 genomes]
rs4541663	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4576155	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4866746	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4866752	0.89[CEU][hapmap];0.87[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap]
rs4866833	0.96[CEU][hapmap];0.95[GIH][hapmap];0.98[TSI][hapmap];0.84[EUR][1000 genomes]
rs55641556	0.81[EUR][1000 genomes]
rs56400900	0.81[EUR][1000 genomes]
rs57547662	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs57597020	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6451693	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6451695	1.00[ASW][hapmap];0.96[CEU][hapmap];0.95[GIH][hapmap];0.83[LWK][hapmap];0.98[TSI][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6451696	1.00[ASW][hapmap];0.96[CEU][hapmap];0.95[GIH][hapmap];0.83[LWK][hapmap];0.98[TSI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6451698	0.96[CEU][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6451703	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6451704	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6451706	1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6451718	0.89[CEU][hapmap];0.94[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap]
rs67466542	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6858942	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6859344	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6861704	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6862102	0.96[CEU][hapmap];0.88[YRI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6865217	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6870018	0.96[CEU][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6870783	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6883661	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73100614	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs750582	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs750584	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7703662	0.94[JPT][hapmap];0.84[AMR][1000 genomes]
rs7707976	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7708369	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7708443	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7724571	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7731091	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7734393	0.80[EUR][1000 genomes]
rs7735243	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9292883	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9686159	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9885467	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6451692	NNT	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43426400-43443600	Weak transcription	Esophagus	oesophagus
2	chr5:43429400-43460200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:43431400-43433800	Enhancers	HMEC	breast
4	chr5:43431400-43434400	Enhancers	Fetal Intestine Small	intestine
5	chr5:43431600-43433800	Enhancers	Placenta	Placenta
6	chr5:43432000-43433800	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr5:43432200-43433800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr5:43432200-43433800	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr5:43432200-43433800	Flanking Active TSS	Hela-S3	cervix
10	chr5:43432200-43434000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr5:43432200-43434000	Enhancers	Duodenum Mucosa	Duodenum
12	chr5:43432200-43434400	Enhancers	Liver	Liver
13	chr5:43432400-43433800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr5:43432400-43433800	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr5:43432400-43433800	Enhancers	Duodenum Smooth Muscle	Duodenum
16	chr5:43432600-43434000	Enhancers	Pancreas	Pancrea
17	chr5:43433000-43433800	Enhancers	Gastric	stomach
18	chr5:43433200-43434200	Enhancers	A549	lung
19	chr5:43433200-43454400	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr5:43433200-43460200	Weak transcription	NHLF	lung
21	chr5:43433400-43434400	Enhancers	HepG2	liver
22	chr5:43433400-43443600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr5:43433400-43456000	Weak transcription	Brain Hippocampus Middle	brain
24	chr5:43433600-43433800	Weak transcription	NH-A	brain
25	chr5:43433600-43434000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr5:43433600-43435800	Weak transcription	Fetal Lung	lung
27	chr5:43433600-43443000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr5:43433600-43443400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr5:43433600-43452200	Weak transcription	Osteobl	bone

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