Variant report

Variant rs3806870
Chromosome Location chr5:43485034-43485035
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:107 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:43482600-43485200 Active TSS iPS-20b Cell Line embryonic stem cell
2 chr5:43484600-43485200 Flanking Active TSS hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
3 chr5:43484600-43485200 Flanking Active TSS iPS-18 Cell Line embryonic stem cell
4 chr5:43484600-43485200 Flanking Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
5 chr5:43484600-43485200 Flanking Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
6 chr5:43484600-43485200 Flanking Active TSS Primary B cells from cord blood blood
7 chr5:43484600-43485200 Flanking Active TSS Primary T helper memory cells from peripheral blood 1 blood
8 chr5:43484600-43485200 Flanking Active TSS Primary T helper cells PMA-I stimulated --
9 chr5:43484600-43485200 Flanking Active TSS Primary T regulatory cells fromperipheralblood blood
10 chr5:43484600-43485200 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
11 chr5:43484600-43485200 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
12 chr5:43484600-43485200 Flanking Active TSS Adipose Nuclei Adipose
13 chr5:43484600-43485200 Flanking Active TSS Brain Anterior Caudate brain
14 chr5:43484600-43485200 Flanking Active TSS Brain Cingulate Gyrus brain
15 chr5:43484600-43485200 Flanking Active TSS Brain Hippocampus Middle brain
16 chr5:43484600-43485200 Flanking Active TSS Fetal Heart heart
17 chr5:43484600-43485200 Flanking Active TSS Fetal Thymus thymus
18 chr5:43484600-43485200 Flanking Active TSS Rectal Smooth Muscle rectum
19 chr5:43484600-43485200 Flanking Active TSS Skeletal Muscle Female skeletal muscle
20 chr5:43484600-43485200 Flanking Active TSS GM12878-XiMat blood
21 chr5:43484600-43485200 Flanking Active TSS K562 blood
22 chr5:43484600-43485400 Flanking Active TSS Dnd41 blood
23 chr5:43484800-43485200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
24 chr5:43484800-43485200 Flanking Active TSS Brain Inferior Temporal Lobe brain
25 chr5:43484800-43485200 Enhancers Brain Substantia Nigra brain
26 chr5:43484800-43485200 Flanking Active TSS Colon Smooth Muscle Colon
27 chr5:43484800-43485200 Enhancers Fetal Intestine Large intestine
28 chr5:43484800-43485200 Enhancers Placenta Amnion Placenta Amnion
29 chr5:43484800-43485200 Enhancers HSMM muscle
30 chr5:43484800-43485200 Enhancers NHLF lung
31 chr5:43484800-43485400 Enhancers Primary hematopoietic stem cells blood
32 chr5:43484800-43485400 Enhancers Cortex derived primary cultured neurospheres brain
33 chr5:43484800-43485600 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
34 chr5:43484800-43485600 Enhancers Primary Natural Killer cells fromperipheralblood blood
35 chr5:43484800-43485800 Enhancers Primary monocytes fromperipheralblood blood
36 chr5:43484800-43485800 Enhancers Primary B cells from peripheral blood blood
37 chr5:43484800-43486000 Enhancers Primary T helper 17 cells PMA-I stimulated --
38 chr5:43484800-43486200 Enhancers Stomach Mucosa stomach
39 chr5:43484800-43486600 Enhancers Primary T cells fromperipheralblood blood
40 chr5:43484800-43486800 Enhancers Fetal Adrenal Gland Adrenal Gland
41 chr5:43484800-43487600 Enhancers Primary T helper naive cells fromperipheralblood blood
42 chr5:43484800-43498000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
43 chr5:43484800-43502800 Weak transcription H1 Cell Line embryonic stem cell
44 chr5:43484800-43502800 Weak transcription H9 Cell Line embryonic stem cell
45 chr5:43484800-43502800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
46 chr5:43484800-43502800 Weak transcription Fetal Muscle Trunk muscle
47 chr5:43484800-43505600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
48 chr5:43484800-43511000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
49 chr5:43484800-43514000 Weak transcription ES-WA7 Cell Line embryonic stem cell
50 chr5:43484800-43514600 Weak transcription Ovary ovary

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