Variant report

Variant	rs750584
Chromosome Location	chr5:43430406-43430407
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:43395606..43397205-chr5:43429947..43432661,2	MCF-7	breast:
2	chr5:43421006..43424016-chr5:43430085..43432621,4	MCF-7	breast:
3	chr5:43429044..43431597-chr5:43483560..43485398,2	K562	blood:
4	chr5:43424455..43437851-chr5:43481449..43486495,21	MCF-7	breast:
5	chr5:43425564..43427749-chr5:43427854..43431267,3	MCF-7	breast:
6	chr5:43415058..43417712-chr5:43429941..43433858,3	MCF-7	breast:
7	chr5:43425434..43428168-chr5:43429895..43432918,3	K562	blood:

Variant related genes	Relation type
ENSG00000151881	Chromatin interaction
ENSG00000249492	Chromatin interaction

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10036954	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10038608	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10042992	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10045400	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10045455	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10057103	0.89[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap]
rs10058558	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs10061165	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10065863	0.89[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap]
rs10074682	0.96[CEU][hapmap];0.83[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10447144	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10462051	0.96[CEU][hapmap]
rs10473311	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1072745	0.90[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap]
rs1072746	0.90[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap]
rs10941640	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs12652547	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs12659369	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12697452	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13185343	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13189004	1.00[CEU][hapmap];0.88[CHB][hapmap];0.93[JPT][hapmap]
rs1389868	0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1389869	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1428640	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2013173	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2131999	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2132000	0.89[EUR][1000 genomes]
rs2172763	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34007811	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35710460	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35881272	0.84[EUR][1000 genomes]
rs36013953	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3776423	0.96[CEU][hapmap];0.83[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3806870	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4073848	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs4073850	0.85[EUR][1000 genomes]
rs4073851	0.81[EUR][1000 genomes]
rs4242099	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4308491	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4331909	0.84[EUR][1000 genomes]
rs4367306	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs4415083	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4467713	0.96[CEU][hapmap]
rs4513704	0.80[EUR][1000 genomes]
rs4541663	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4576155	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4866746	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4866752	0.89[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap]
rs4866833	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs57547662	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57597020	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6451692	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6451693	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6451695	0.96[CEU][hapmap];0.83[YRI][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6451696	0.96[CEU][hapmap];0.83[YRI][hapmap];0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6451698	0.96[CEU][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6451703	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6451704	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6451706	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6451718	0.89[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs67466542	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6858942	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6859344	0.82[AMR][1000 genomes]
rs6861704	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6862102	0.96[CEU][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6865217	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6870018	0.96[CEU][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6870783	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6883661	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73100614	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs750582	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7703662	0.94[JPT][hapmap];0.85[AMR][1000 genomes]
rs7707976	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7708369	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7708443	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7724571	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7731091	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7735243	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9292883	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9686159	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9885467	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43419000-43432600	Weak transcription	Colonic Mucosa	Colon
2	chr5:43422000-43432600	Weak transcription	Pancreas	Pancrea
3	chr5:43422800-43432800	Weak transcription	NH-A	brain
4	chr5:43426400-43443600	Weak transcription	Esophagus	oesophagus
5	chr5:43427000-43432800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr5:43428600-43431400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr5:43428800-43432200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr5:43428800-43432200	Weak transcription	Duodenum Mucosa	Duodenum
9	chr5:43428800-43432400	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr5:43428800-43432400	Weak transcription	Fetal Lung	lung
11	chr5:43428800-43432400	Weak transcription	Osteobl	bone
12	chr5:43428800-43432600	Weak transcription	NHLF	lung
13	chr5:43429400-43431600	Weak transcription	Placenta	Placenta
14	chr5:43429400-43432000	Weak transcription	A549	lung
15	chr5:43429400-43432200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr5:43429400-43432200	Weak transcription	Liver	Liver
17	chr5:43429400-43432400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr5:43429400-43460200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr5:43430000-43431200	Weak transcription	HepG2	liver
20	chr5:43430200-43432200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr5:43430400-43431400	Weak transcription	HMEC	breast
22	chr5:43430400-43431600	Weak transcription	Hela-S3	cervix
23	chr5:43430400-43432000	Weak transcription	NHEK	skin
24	chr5:43430400-43432200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr5:43430400-43432200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr5:43430400-43432200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr5:43430400-43432200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr5:43430400-43432200	Weak transcription	Stomach Mucosa	stomach

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