Variant report

Variant	rs10473310
Chromosome Location	chr5:43436798-43436799
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:43435581..43438769-chr5:43481595..43484354,3	K562	blood:
2	chr5:43311687..43314075-chr5:43436636..43439465,2	K562	blood:
3	chr5:43435811..43438769-chr5:43481595..43484330,2	K562	blood:
4	chr5:43424455..43437851-chr5:43481449..43486495,21	MCF-7	breast:
5	chr5:43431725..43434320-chr5:43436226..43437819,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000249492	Chromatin interaction
ENSG00000112972	Chromatin interaction
ENSG00000151881	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10036954	0.84[ASN][1000 genomes]
rs10038545	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10053229	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10054519	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10066408	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10068064	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10074682	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10472380	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10473311	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1389868	0.94[ASN][1000 genomes]
rs1389869	1.00[ASN][1000 genomes]
rs1389870	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1593971	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2131998	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2132001	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2132003	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28437972	0.87[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs3776423	0.84[ASN][1000 genomes]
rs4072918	0.87[EUR][1000 genomes]
rs4072919	0.87[EUR][1000 genomes]
rs4074777	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55855322	0.87[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs56008952	0.81[EUR][1000 genomes]
rs56333629	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57403343	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57547662	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60297702	0.83[EUR][1000 genomes]
rs6451693	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6451695	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6451696	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6451697	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6451698	0.81[AMR][1000 genomes]
rs6451699	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6451704	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6451705	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66495712	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67466542	0.84[ASN][1000 genomes]
rs6858942	0.92[ASN][1000 genomes]
rs6862102	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6866325	0.81[EUR][1000 genomes]
rs6869933	0.81[EUR][1000 genomes]
rs6870018	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6878770	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6885679	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6891363	0.81[EUR][1000 genomes]
rs6895327	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6896693	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72756535	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73100614	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs750583	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7703662	0.82[EUR][1000 genomes]
rs7710628	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7718627	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7732140	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7736108	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10473310	NNT	cis	multi-tissue	Pritchard
rs10473310	NNT	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43426400-43443600	Weak transcription	Esophagus	oesophagus
2	chr5:43429400-43460200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:43433200-43454400	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr5:43433200-43460200	Weak transcription	NHLF	lung
5	chr5:43433400-43443600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr5:43433400-43456000	Weak transcription	Brain Hippocampus Middle	brain
7	chr5:43433600-43443000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr5:43433600-43443400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr5:43433600-43452200	Weak transcription	Osteobl	bone
10	chr5:43433800-43483400	Weak transcription	Gastric	stomach
11	chr5:43434400-43437200	Weak transcription	Liver	Liver
12	chr5:43434400-43437200	Weak transcription	HepG2	liver
13	chr5:43436200-43443600	Weak transcription	Fetal Lung	lung

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