Variant report

Variant	rs7543777
Chromosome Location	chr1:211171771-211171772
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11119639	0.80[AMR][1000 genomes]
rs1501553	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1501554	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1566602	0.80[AMR][1000 genomes]
rs2062673	0.81[EUR][1000 genomes]
rs2088877	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2102129	0.81[AMR][1000 genomes]
rs2202095	0.81[EUR][1000 genomes]
rs2358115	0.84[AMR][1000 genomes]
rs4027133	0.85[AMR][1000 genomes]
rs4345850	0.87[AMR][1000 genomes]
rs4639824	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4951700	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4951701	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7415388	0.82[AMR][1000 genomes]
rs924568	0.81[EUR][1000 genomes]
rs973945	0.84[AMR][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211152800-211183400	Weak transcription	HSMMtube	muscle
2	chr1:211163800-211179400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:211168000-211180600	Weak transcription	HSMM	muscle
4	chr1:211168000-211181600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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