Variant report

Variant	rs2102129
Chromosome Location	chr1:211193592-211193593
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10863871	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11119636	0.80[CHB][hapmap];0.92[JPT][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11119639	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1501553	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1501554	0.91[CHB][hapmap];0.93[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1501561	1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1542887	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs1546277	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1566602	0.90[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1587579	0.82[AFR][1000 genomes]
rs2062673	0.91[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2088877	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2202095	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2358092	0.82[CHB][hapmap];0.92[JPT][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2358114	0.83[AMR][1000 genomes]
rs2358115	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2358117	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4639824	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4951700	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4951701	0.91[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4951702	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs4951704	1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap]
rs4951706	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs4951708	0.95[AFR][1000 genomes]
rs6686447	0.91[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6702809	0.80[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7415388	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7543777	0.81[AMR][1000 genomes]
rs924567	0.91[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs924568	0.91[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9662077	0.81[AMR][1000 genomes]
rs973945	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211181800-211193800	Weak transcription	Brain Anterior Caudate	brain
2	chr1:211182800-211228600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:211184800-211198600	Weak transcription	Brain Hippocampus Middle	brain
4	chr1:211185200-211194000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr1:211187000-211198200	Weak transcription	Brain Angular Gyrus	brain
6	chr1:211187600-211198200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr1:211190600-211198800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr1:211192400-211194800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr1:211192400-211194800	Weak transcription	A549	lung
10	chr1:211192400-211198400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr1:211192600-211198400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr1:211192600-211199800	Weak transcription	Brain Substantia Nigra	brain
13	chr1:211192600-211209000	Weak transcription	HSMMtube	muscle
14	chr1:211192800-211193800	Weak transcription	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links