Variant report

Variant	rs1501561
Chromosome Location	chr1:211109838-211109839
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:211109430..211112551-chr1:211113877..211116492,3	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10779547	0.95[AFR][1000 genomes]
rs10779548	0.81[CEU][hapmap]
rs10863871	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11119636	0.92[CEU][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11119639	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1354112	0.81[CEU][hapmap];0.85[YRI][hapmap]
rs1393029	0.81[CEU][hapmap]
rs1501547	0.90[AFR][1000 genomes]
rs1501553	1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1501554	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1542887	0.80[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs1546277	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1566602	1.00[CEU][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1777242	0.82[CEU][hapmap];0.85[YRI][hapmap]
rs1846946	0.81[CEU][hapmap]
rs2062673	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2088877	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2102129	1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2202095	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2358092	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2358115	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2358117	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4639824	0.87[EUR][1000 genomes]
rs4951491	0.87[CEU][hapmap]
rs4951700	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4951701	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4951702	0.81[CEU][hapmap];1.00[YRI][hapmap]
rs4951704	0.96[CEU][hapmap];1.00[YRI][hapmap]
rs4951706	1.00[YRI][hapmap]
rs6686447	0.95[CEU][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6692020	0.81[CEU][hapmap]
rs6702809	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7415388	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7547937	0.90[AFR][1000 genomes]
rs924567	1.00[CEU][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs924568	1.00[CEU][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9662077	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs973945	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs985382	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873154	chr1:211057697-211117197	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211093400-211110800	Weak transcription	HSMM	muscle
2	chr1:211108600-211117400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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